PLAZA 4.0 Monocots gene overview : LOC_Os06g08450

Gene: LOC_Os06g08450 (Oryza sativa ssp. japonica)

Overview

Gene Identifier: LOC_Os06g08450
Transcript Identifier: LOC_Os06g08450.1
Gene Type: Coding gene
Location: Chr6 : 4142851-4150976 : negative

Family

Gene family: HOM04M000291
(359 genes in 29 species)
specific family
Subfamily: ORTHO04M003897
(50 genes in 26 species)
specific family

Descriptions

Description: histidine kinase, putative, expressed

Identifiers

Type	Value
id	LOC_Os06g08450.MSUv7.0
pacid	33147268
tid	LOC_Os06g08450.1.MSUv7.0
tid	LOC_Os06g08450.1
RAP	Os06g0183450

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0000160	IEA	InterPro	phosphorelay signal transduction system
GO:0016310	IEA	InterPro	phosphorylation
GO:0007165	IEA	InterPro	signal transduction
GO:0009736	IEA	UniProt	cytokinin-activated signaling pathway
GO:0010375	IEA	PLAZA Integrative Orthology	stomatal complex patterning	AT2G17820
GO:0010431	IEA	PLAZA Integrative Orthology	seed maturation	AT2G17820
GO:0009414	IEA	PLAZA Integrative Orthology	response to water deprivation	AT2G17820
GO:0080117	IEA	PLAZA Integrative Orthology	secondary growth	AT2G47430
GO:0009553	IEA	PLAZA Integrative Orthology	embryo sac development	AT2G47430
GO:0046777	IEA	PLAZA Integrative Orthology	protein autophosphorylation	AT2G47430
GO:0006970	IEA	PLAZA Integrative Orthology	response to osmotic stress	AT2G17820
GO:0010087	IEA	PLAZA Integrative Orthology	phloem or xylem histogenesis	AT2G47430

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0016772	IEA	InterPro	transferase activity, transferring phosphorus-containing groups
GO:0000155	IEA	UniProt	phosphorelay sensor kinase activity
GO:0005515	IEA	PLAZA Integrative Orthology	protein binding	AT2G47430
GO:0009927	IEA	PLAZA Integrative Orthology	histidine phosphotransfer kinase activity	AT2G17820
GO:0000156	IEA	PLAZA Integrative Orthology	phosphorelay response regulator activity	AT2G47430
GO:0004673	IEA	PLAZA Integrative Orthology	protein histidine kinase activity	AT2G47430
GO:0004674	IEA	PLAZA Integrative Orthology	protein serine/threonine kinase activity	AT2G47430
GO:0005034	IEA	PLAZA Integrative Orthology	osmosensor activity	AT2G17820
GO:0042803	IEA	PLAZA Integrative Orthology	protein homodimerization activity	AT2G47430

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0016021	IEA	UniProt	integral component of membrane
GO:0005622	IEA	UniProt	intracellular
GO:0005886	IEA	UniProt	plasma membrane
GO:0016020	IEA	PLAZA Integrative Orthology	membrane	AT2G47430
GO:0005737	IEA	PLAZA Integrative Orthology	cytoplasm	AT2G47430
GO:0009506	IEA	PLAZA Integrative Orthology	plasmodesma	AT2G47430
GO:0005634	IEA	PLAZA Integrative Orthology	nucleus	AT2G47430

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR003594	Histidine kinase-like ATPase, C-terminal domain
IPR001789	Signal transduction response regulator, receiver domain
IPR004358	Signal transduction histidine kinase-related protein, C-terminal
IPR005467	Histidine kinase domain
IPR003661	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain
IPR011006	CheY-like superfamily

Mapman id	Description
11.4.2.3	.Phytohormone action.cytokinin.perception and signal transduction.signalling pathway activator (CKI1)

No SignalP domains detected for this gene.