Gene: LOC_Os05g46510 (Oryza sativa ssp. japonica)

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Gene Identifier
LOC_Os05g46510
Transcript Identifier
LOC_Os05g46510.1
Gene Type
Coding gene
Location
Chr5 : 26940490-26942951 : positive

Family

Gene family
HOM04M000090
(926 genes in 27 species)
specific family
Subfamily
ORTHO04M000273
(289 genes in 27 species)
specific family
Duplication type
Tandem duplicate

Descriptions

Description
polygalacturonase, putative, expressed

Identifiers

Type Value
idLOC_Os05g46510.MSUv7.0
pacid33155227
tidLOC_Os05g46510.1.MSUv7.0
tidLOC_Os05g46510.1
RAPOs05g0542800

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0005975 IEAInterProcarbohydrate metabolic process

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004650 IEAInterPropolygalacturonase activity
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT1G80170

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009505 IEAPLAZA Integrative Orthologyplant-type cell wallAT1G80170

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR012334Pectin lyase fold
IPR000743Glycoside hydrolase, family 28
IPR006626Parallel beta-helix repeat
IPR011050Pectin lyase fold/virulence factor

Mapman id Description
50.3.2.Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase
No SignalP domains detected for this gene.