Gene: LOC_Os04g43680 (Oryza sativa ssp. japonica)

Overview top

Gene Identifier
LOC_Os04g43680
Transcript Identifier
LOC_Os04g43680.1
Gene Type
Coding gene
Location
Chr4 : 25843373-25844780 : negative

Family

Gene family
HOM04M000010
(3187 genes in 28 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
MYB family transcription factor, putative, expressed

Identifiers

Type Value
idLOC_Os04g43680.MSUv7.0
pacid33110933
tidLOC_Os04g43680.1.MSUv7.0
tidLOC_Os04g43680.1
RAPOs04g0517100

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0030154 IBAUniProtcell differentiation
GO:0006357 IBAUniProtregulation of transcription from RNA polymerase II promoter
GO:0006351 IEAUniProttranscription, DNA-templated
GO:0009409 IEAPLAZA Integrative Orthologyresponse to coldAT2G31180
GO:0009739 IEAPLAZA Integrative Orthologyresponse to gibberellinAT1G06180
GO:0009651 IEAPLAZA Integrative Orthologyresponse to salt stressAT2G31180
GO:0045893 IEAPLAZA Integrative Orthologypositive regulation of transcription, DNA-templatedAT2G31180
GO:0009753 IEAPLAZA Integrative Orthologyresponse to jasmonic acidAT2G31180
GO:0050826 IEAPLAZA Integrative Orthologyresponse to freezingAT2G31180
GO:0009751 IEAPLAZA Integrative Orthologyresponse to salicylic acidAT2G31180
GO:0009723 IEAPLAZA Integrative Orthologyresponse to ethyleneAT2G31180
GO:0009733 IEAPLAZA Integrative Orthologyresponse to auxinAT2G31180

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677 IEAInterProDNA binding
GO:0000981 IBAUniProtRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0043565 IBAUniProtsequence-specific DNA binding
GO:0001135 IBAUniProttranscription factor activity, RNA polymerase II transcription factor recruiting
GO:0044212 IBAUniProttranscription regulatory region DNA binding
GO:0003700 IEAPLAZA Integrative Orthologytranscription factor activity, sequence-specific DNA bindingAT2G31180

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IBAUniProtnucleus

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR001005SANT/Myb domain
IPR017930Myb domain
IPR009057Homeobox domain-like

Mapman id Description
15.5.2.1.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)
No SignalP domains detected for this gene.