Gene: LOC_Os03g59040 (Oryza sativa ssp. japonica)

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Gene Identifier
LOC_Os03g59040
Transcript Identifier
LOC_Os03g59040.1
Gene Type
Coding gene
Location
Chr3 : 33605595-33611945 : positive

Family

Gene family
HOM04M003160
(53 genes in 28 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
squalene synthetase, putative, expressed

Identifiers

Type Value
idLOC_Os03g59040.MSUv7.0
pacid33130102
tidLOC_Os03g59040.1.MSUv7.0
tidLOC_Os03g59040.1
RAPOs03g0805100

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006696 IEAUniProtergosterol biosynthetic process
GO:0009058 IEAInterProbiosynthetic process
GO:0008610 IEAInterProlipid biosynthetic process
GO:0045338 IBAUniProtfarnesyl diphosphate metabolic process
GO:0016126 IBAUniProtsterol biosynthetic process

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004310 IBA, IEAUniProtfarnesyl-diphosphate farnesyltransferase activity
GO:0051996 IBA, IEAUniProtsqualene synthase activity
GO:0016740 IEAInterProtransferase activity
GO:0016765 IEAInterProtransferase activity, transferring alkyl or aryl (other than methyl) groups

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0016021 IEAUniProtintegral component of membrane
GO:0005789 IBAUniProtendoplasmic reticulum membrane
GO:0005886 IEAPLAZA Integrative Orthologyplasma membraneAT4G34640
GO:0005783 IEAPLAZA Integrative Orthologyendoplasmic reticulumAT4G34640

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR033904Trans-Isoprenyl Diphosphate Synthases, head-to-head
IPR008949Isoprenoid synthase domain
IPR002060Squalene/phytoene synthase
IPR019845Squalene/phytoene synthase, conserved site
IPR006449Farnesyl-diphosphate farnesyltransferase

Mapman id Description
9.1.5.1.Secondary metabolism.terpenoids.cycloartenol biosynthesis.squalene synthase
No SignalP domains detected for this gene.