Gene: LOC_Os03g57290 (Oryza sativa ssp. japonica)

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Gene Identifier
LOC_Os03g57290
Transcript Identifier
LOC_Os03g57290.1
Gene Type
Coding gene
Location
Chr3 : 32672184-32678826 : positive

Family

Gene family
HOM04M000392
(290 genes in 29 species)
specific family
Subfamily
ORTHO04M005522
(40 genes in 29 species)
specific family

Descriptions

Description
cullin, putative, expressed

Identifiers

Type Value
idLOC_Os03g57290.MSUv7.0
pacid33128869
tidLOC_Os03g57290.1.MSUv7.0
tidLOC_Os03g57290.1
RAPOs03g0786800

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006511 IEAUniProtubiquitin-dependent protein catabolic process
GO:0010100 IEAPLAZA Integrative Orthologynegative regulation of photomorphogenesisAT5G46210
GO:0048575 IEAPLAZA Integrative Orthologyshort-day photoperiodism, floweringAT5G46210
GO:0048366 IEAPLAZA Integrative Orthologyleaf developmentAT5G46210
GO:0048367 IEAPLAZA Integrative Orthologyshoot system developmentAT5G46210
GO:0009908 IEAPLAZA Integrative Orthologyflower developmentAT5G46210
GO:0009755 IEAPLAZA Integrative Orthologyhormone-mediated signaling pathwayAT5G46210
GO:0048825 IEAPLAZA Integrative Orthologycotyledon developmentAT5G46210
GO:0010182 IEAPLAZA Integrative Orthologysugar mediated signaling pathwayAT5G46210
GO:0000209 IEAPLAZA Integrative Orthologyprotein polyubiquitinationAT5G46210
GO:0009640 IEAPLAZA Integrative OrthologyphotomorphogenesisAT5G46210
GO:0010154 IEAPLAZA Integrative Orthologyfruit developmentAT5G46210
GO:0006281 IEAPLAZA Integrative OrthologyDNA repairAT5G46210

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0031625 IEAUniProtubiquitin protein ligase binding
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT5G46210

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0031461 IEAUniProtcullin-RING ubiquitin ligase complex
GO:0009536 RCAGene OntologyplastidGR_REF:7047
GO:0005829 IEAPLAZA Integrative OrthologycytosolAT5G46210
GO:0000151 IEAPLAZA Integrative Orthologyubiquitin ligase complexAT5G46210
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT5G46210
GO:0080008 IEAPLAZA Integrative OrthologyCul4-RING E3 ubiquitin ligase complexAT5G46210

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR011991Winged helix-turn-helix DNA-binding domain
IPR001373Cullin, N-terminal
IPR019559Cullin protein, neddylation domain
IPR016157Cullin, conserved site
IPR016158Cullin homology
IPR016159Cullin repeat-like-containing domain

Mapman id Description
19.2.2.8.3.1.Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.CUL4-DDB1 ubiquitination complexes.scaffold component CUL4
26.1.1.3.1.External stimuli response.light.red/far red light.CUL4-DDB1 ubiquitination complex.scaffold component (CUL4)
No SignalP domains detected for this gene.