Gene: LOC_Os03g46330 (Oryza sativa ssp. japonica)

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Gene Identifier
LOC_Os03g46330
Transcript Identifier
LOC_Os03g46330.1
Gene Type
Coding gene
Location
Chr3 : 26203938-26207465 : positive

Family

Gene family
HOM04M000422
(271 genes in 29 species)
specific family
Subfamily
ORTHO04M001556
(92 genes in 29 species)
specific family
Duplication type
Tandem duplicate

Descriptions

Description
pattern formation protein EMB30, putative, expressed

Identifiers

Type Value
idLOC_Os03g46330.MSUv7.0
pacid33129179
tidLOC_Os03g46330.1.MSUv7.0
tidLOC_Os03g46330.1
RAPOs03g0666100

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0032012 IEAUniProtregulation of ARF protein signal transduction
GO:0016192 IBAUniProtvesicle-mediated transport
GO:0010540 IEAPLAZA Integrative Orthologybasipetal auxin transportAT1G13980
GO:0001736 IEAPLAZA Integrative Orthologyestablishment of planar polarityAT1G13980
GO:0009942 IEAPLAZA Integrative Orthologylongitudinal axis specificationAT1G13980
GO:0048209 IEAPLAZA Integrative Orthologyregulation of vesicle targeting, to, from or within GolgiAT1G13980
GO:0009846 IEAPLAZA Integrative Orthologypollen germinationAT5G19610
GO:0006897 IEAPLAZA Integrative OrthologyendocytosisAT1G13980
GO:0048765 IEAPLAZA Integrative Orthologyroot hair cell differentiationAT1G13980
GO:0009880 IEAPLAZA Integrative Orthologyembryonic pattern specificationAT1G13980
GO:0006890 IEAPLAZA Integrative Orthologyretrograde vesicle-mediated transport, Golgi to ERAT5G39500
GO:0010274 IEAPLAZA Integrative OrthologyhydrotropismAT1G13980
GO:0071555 IEAPLAZA Integrative Orthologycell wall organizationAT1G13980
GO:0010311 IEAPLAZA Integrative Orthologylateral root formationAT1G13980
GO:0032509 IEAPLAZA Integrative Orthologyendosome transport via multivesicular body sorting pathwayAT1G13980
GO:0009826 IEAPLAZA Integrative Orthologyunidimensional cell growthAT1G13980
GO:0080119 IEAPLAZA Integrative OrthologyER body organizationAT5G39500
GO:0007155 IEAPLAZA Integrative Orthologycell adhesionAT1G13980
GO:0000911 IEAPLAZA Integrative Orthologycytokinesis by cell plate formationAT1G13980
GO:0010087 IEAPLAZA Integrative Orthologyphloem or xylem histogenesisAT1G13980
GO:0009793 IEAPLAZA Integrative Orthologyembryo development ending in seed dormancyAT1G13980

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005086 IBA, IEAUniProtARF guanyl-nucleotide exchange factor activity
GO:0005488 IEAInterProbinding
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT1G13980
GO:0010292 IEAPLAZA Integrative OrthologyGTP:GDP antiporter activityAT1G13980
GO:0042803 IEAPLAZA Integrative Orthologyprotein homodimerization activityAT1G13980
GO:0042802 IEAPLAZA Integrative Orthologyidentical protein bindingAT1G13980

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005802 IBAUniProttrans-Golgi network
GO:0090406 IEAPLAZA Integrative Orthologypollen tubeAT5G19610
GO:0005886 IEAPLAZA Integrative Orthologyplasma membraneAT1G13980
GO:0005768 IEAPLAZA Integrative OrthologyendosomeAT1G13980
GO:0005794 IEAPLAZA Integrative OrthologyGolgi apparatusAT5G39500

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR023394Sec7 domain, alpha orthogonal bundle
IPR032691Guanine nucleotide exchange factor, N-terminal
IPR000904Sec7 domain
IPR016024Armadillo-type fold

Mapman id Description
22.3.3.1.Vesicle trafficking.Coat protein I (COPI) coatomer machinery.ARF-GTPase guanyl-nucleotide exchange factor (ARF-GEF) activities.ARF-GEF factor (GBF)
No SignalP domains detected for this gene.