Gene: LOC_Os03g19560 (Oryza sativa ssp. japonica)

Overview top

Gene Identifier
LOC_Os03g19560
Transcript Identifier
LOC_Os03g19560.2
Gene Type
Coding gene
Location
Chr3 : 10993157-10997504 : negative

Family

Gene family
HOM04M003502
(49 genes in 29 species)
specific family
Duplication type
Tandem duplicate

Descriptions

Description
tetratricopeptide repeat domain containing protein, expressed

Identifiers

Type Value
idLOC_Os03g19560.MSUv7.0
pacid33128713
tidLOC_Os03g19560.2.MSUv7.0
tidLOC_Os03g19560.2
RAPOs03g0308800

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006396 IEAUniProtRNA processing
GO:0006397 IEAUniProtmRNA processing
GO:1901918 IEAUniProtnegative regulation of exoribonuclease activity
GO:0009657 IEAUniProtplastid organization
GO:0006417 IEAUniProtregulation of translation
GO:0010114 IEAUniProtresponse to red light

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515 IEAInterProprotein binding
GO:0043621 IEAUniProtprotein self-association
GO:0003727 IEAUniProtsingle-stranded RNA binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009536 RCAGene OntologyplastidGR_REF:7047
GO:0031969 IEAUniProtchloroplast membrane
GO:0009570 IEAUniProtchloroplast stroma
GO:0005774 IEAUniProtvacuolar membrane
GO:0009941 IEAPLAZA Integrative Orthologychloroplast envelopeAT3G17040
GO:0009507 IEAPLAZA Integrative OrthologychloroplastAT3G17040

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR011990Tetratricopeptide-like helical domain
IPR019734Tetratricopeptide repeat
IPR013026Tetratricopeptide repeat-containing domain
IPR003107HAT (Half-A-TPR) repeat

Mapman id Description
16.12.4.5.RNA processing.organelle machinery.RNA stability.psbH/psbB-transcript stability factor (HCF107)
No SignalP domains detected for this gene.