Gene: LOC_Os03g17610 (Oryza sativa ssp. japonica)

Overview top

Gene Identifier
LOC_Os03g17610
Transcript Identifier
LOC_Os03g17610.1
Gene Type
Coding gene
Location
Chr3 : 9797352-9798680 : positive

Family

Gene family
HOM04M001378
(107 genes in 29 species)
specific family
Subfamily
ORTHO04M007928
(32 genes in 28 species)
specific family

Descriptions

Description
OsTOP6A3 - Topoisomerase 6 subunit A homolog 3, expressed

Identifiers

Type Value
idLOC_Os03g17610.MSUv7.0
pacid33127657
tidLOC_Os03g17610.1.MSUv7.0
tidLOC_Os03g17610.1
RAPOs03g0284800

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006265 IEAUniProtDNA topological change
GO:0000737 IEAUniProtDNA catabolic process, endonucleolytic
GO:0006259 IEAInterProDNA metabolic process
GO:0042138 IBAUniProtmeiotic DNA double-strand break formation
GO:0000706 IBAUniProtmeiotic DNA double-strand break processing
GO:0007131 IBAUniProtreciprocal meiotic recombination
GO:0009957 IEAPLAZA Integrative Orthologyepidermal cell fate specificationAT5G02820

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677 IBA, IEA, UniProtDNA binding
GO:0003918 IBA, IEA, UniProtDNA topoisomerase type II (ATP-hydrolyzing) activity
GO:0003824 IEAInterProcatalytic activity
GO:0005524 IEAUniProtATP binding
GO:0016889 IBAUniProtendodeoxyribonuclease activity, producing 3'-phosphomonoesters
GO:0042802 IEAUniProtidentical protein binding
GO:0046872 IEAUniProtmetal ion binding
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT5G02820

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005694 IEAInterProchromosome
GO:0009536 RCAGene OntologyplastidGR_REF:7047
GO:0000228 IBAUniProtnuclear chromosome
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT5G02820

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR034136Topoisomerase 6 subunit A/Spo11, TOPRIM domain
IPR011991Winged helix-turn-helix DNA-binding domain
IPR004085DNA topoisomerase VI, subunit A
IPR002815Spo11/DNA topoisomerase VI subunit A
IPR013049Spo11/DNA topoisomerase VI, subunit A, N-terminal

Mapman id Description
35.1not assigned.annotated
No SignalP domains detected for this gene.