PLAZA 4.0 Monocots gene overview : LOC_Os02g56540

Gene: LOC_Os02g56540 (Oryza sativa ssp. japonica)

Overview

Gene Identifier: LOC_Os02g56540
Transcript Identifier: LOC_Os02g56540.1
Gene Type: Coding gene
Location: Chr2 : 34632308-34636359 : positive

Family

Gene family: HOM04M000020
(1960 genes in 29 species)
specific family
Subfamily: ORTHO04M004148
(48 genes in 27 species)
specific family

Descriptions

Description: kinesin motor domain containing protein, putative, expressed

Identifiers

Type	Value
id	LOC_Os02g56540.MSUv7.0
pacid	33138758
tid	LOC_Os02g56540.1.MSUv7.0
tid	LOC_Os02g56540.1
RAP	Os02g0810200

Toolbox

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0007018	IBA, IEA,	UniProt	microtubule-based movement
GO:0047496	IEA	PLAZA Integrative Orthology	vesicle transport along microtubule	AT4G14330

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003777	IEA	InterPro	microtubule motor activity
GO:0005524	IEA	UniProt	ATP binding
GO:0008017	IEA	UniProt	microtubule binding
GO:0008574	IBA	UniProt	ATP-dependent microtubule motor activity, plus-end-directed

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009536	RCA	Gene Ontology	plastid	GR_REF:7047
GO:0005871	IBA	UniProt	kinesin complex
GO:0005874	IEA	UniProt	microtubule
GO:0009524	IEA	PLAZA Integrative Orthology	phragmoplast	AT4G14330
GO:0005622	IEA	PLAZA Integrative Orthology	intracellular	AT4G14330
GO:0005737	IEA	PLAZA Integrative Orthology	cytoplasm	AT4G14330
GO:0005623	IEA	PLAZA Integrative Orthology	cell	AT4G14330

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001752	Kinesin motor domain
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Mapman id	Description
13.4.3.4	.Cell cycle organisation.cytokinesis.phragmoplast microtubule organization.microtubule-based motor protein (Kinesin-10)
20.1.3.9	.Cytoskeleton organisation.microtubular network.Kinesin microtubule-based motor protein activities.motor protein (Kinesin-10)

No SignalP domains detected for this gene.