Gene: LOC_Os02g05840 (Oryza sativa ssp. japonica)

Overview top

Gene Identifier
LOC_Os02g05840
Transcript Identifier
LOC_Os02g05840.1
Gene Type
Coding gene
Location
Chr2 : 2877244-2882018 : negative

Family

Gene family
HOM04M001161
(123 genes in 25 species)
specific family

Descriptions

Description
VIL2 protein, putative, expressed

Identifiers

Type Value
idLOC_Os02g05840.MSUv7.0
pacid33137435
tidLOC_Os02g05840.1.MSUv7.0
tidLOC_Os02g05840.1
RAPOs02g0152500

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0010048 IEAPLAZA Integrative Orthologyvernalization responseAT5G57380
GO:0070417 IEAPLAZA Integrative Orthologycellular response to coldAT5G57380
GO:0010228 IEAPLAZA Integrative Orthologyvegetative to reproductive phase transition of meristemAT4G30200
GO:0016571 IEAPLAZA Tree-based Orthologyhistone methylationAT3G24440
GO:0051571 IEAPLAZA Integrative Orthologypositive regulation of histone H3-K4 methylationAT5G57380
GO:0048575 IEAPLAZA Tree-based Orthologyshort-day photoperiodism, floweringAT3G24440
GO:0048587 IEAPLAZA Integrative Orthologyregulation of short-day photoperiodism, floweringAT4G30200
GO:0009909 IEAPLAZA Tree-based Orthologyregulation of flower developmentAT3G24440
GO:0001666 IEAPLAZA Integrative Orthologyresponse to hypoxiaAT5G57380
GO:0032922 IEAPLAZA Integrative Orthologycircadian regulation of gene expressionAT4G30200
GO:0048572 IEAPLAZA Tree-based Orthologyshort-day photoperiodismAT3G24440
GO:0009409 IEAPLAZA Integrative Orthologyresponse to coldAT4G30200
GO:0031062 IEAPLAZA Tree-based Orthologypositive regulation of histone methylationAT3G24440
GO:0061087 IEAPLAZA Integrative Orthologypositive regulation of histone H3-K27 methylationAT5G57380
GO:1900111 IEAPLAZA Integrative Orthologypositive regulation of histone H3-K9 dimethylationAT4G30200
GO:0045814 IEAPLAZA Integrative Orthologynegative regulation of gene expression, epigeneticAT5G57380

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515 IEAInterProprotein binding
GO:0035064 IEAPLAZA Integrative Orthologymethylated histone bindingAT4G30200
GO:0042802 IEAPLAZA Integrative Orthologyidentical protein bindingAT4G30200

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0031519 IEAPLAZA Integrative OrthologyPcG protein complexAT4G30200
GO:0009506 IEAPLAZA Integrative OrthologyplasmodesmaAT4G30200
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT5G57380
GO:0005677 IEAPLAZA Integrative Orthologychromatin silencing complexAT4G30200
GO:0016607 IEAPLAZA Integrative Orthologynuclear speckAT5G57380

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR003961Fibronectin type III
IPR013783Immunoglobulin-like fold
IPR032881Oberon, PHD finger domain

Mapman id Description
12.3.3.1.2.2.Chromatin organisation.histone modifications.histone lysine methylation.PRC2 histone methylation complex.associated protein factors.PRC2-VRN-interacting PHD protein (VIN3|VRN5)
No SignalP domains detected for this gene.