Gene: HVU0036G0501 (Hordeum vulgare)

Overview top

Gene Identifier
HVU0036G0501
Transcript Identifier
HVU0036G0501.03
Gene Type
Coding gene
Location
1 : 123635651-123638107 : negative

Family

Gene family
HOM04M003846
(45 genes in 29 species)
specific family
Subfamily
ORTHO04M005193
(42 genes in 29 species)
specific family

Descriptions

Description
pre-mRNA splicing factor-related

Identifiers

Type Value
idMLOC_81960
namePRP1
tidMLOC_81960.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0000398 IEAInterPromRNA splicing, via spliceosome
GO:0006396 IEAInterProRNA processing
GO:2000630 IEAPLAZA Integrative Orthologypositive regulation of miRNA metabolic processAT4G03430
GO:0009845 IEAPLAZA Integrative Orthologyseed germinationAT4G03430
GO:0080188 IEAPLAZA Integrative OrthologyRNA-directed DNA methylationAT4G03430
GO:2000636 IEAPLAZA Integrative Orthologypositive regulation of primary miRNA processingAT4G03430
GO:0019252 IEAPLAZA Tree-based Orthologystarch biosynthetic processLOC_Os10g35550
GO:0009409 IEAPLAZA Integrative Orthologyresponse to coldAT4G03430
GO:0005976 IEAPLAZA Tree-based Orthologypolysaccharide metabolic processLOC_Os10g35550

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515 IEAInterProprotein binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IEAInterPronucleus
GO:0009568 IEAPLAZA Tree-based Orthologyamyloplast starch grainLOC_Os10g35550
GO:0005681 IEAPLAZA Integrative Orthologyspliceosomal complexAT4G03430
GO:0015030 IEAPLAZA Integrative OrthologyCajal bodyAT4G03430

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR011990Tetratricopeptide-like helical domain
IPR027108Pre-mRNA-processing factor 6/Prp1/STA1
IPR010491PRP1 splicing factor, N-terminal
IPR013026Tetratricopeptide repeat-containing domain
IPR003107HAT (Half-A-TPR) repeat

Mapman id Description
16.4.1.4.5.RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (PRPF6/PRP1/STA1)
No SignalP domains detected for this gene.