PLAZA 4.0 Monocots gene overview : GSVIVG01010303001

Gene: GSVIVG01010303001 (Vitis vinifera)

Overview

Gene Identifier: GSVIVG01010303001
Transcript Identifier: GSVIVT01010303001
Gene Type: Coding gene
Location: chr1 : 19227005-19229486 : positive

Family

Gene family: HOM04M000058
(1253 genes in 29 species)
specific family
Subfamily: ORTHO04M003255
(57 genes in 27 species)
specific family
Duplication type: Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
id	GSVIVG01010303001.Genoscope12X
pacid	17822516
tid	GSVIVT01010303001.Genoscope12X
tid	GSVIVT01010303001

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0008152	IEA	InterPro	metabolic process

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0016787	IEA	InterPro	hydrolase activity

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR029058	Alpha/Beta hydrolase fold
IPR013094	Alpha/beta hydrolase fold-3

Mapman id	Description
35.1	not assigned.annotated

No SignalP domains detected for this gene.