PLAZA 4.0 Monocots gene overview : EGU2441G1707

Gene: EGU2441G1707 (Elaeis guineensis)

Overview

Gene Identifier: EGU2441G1707
Transcript Identifier: EGU2441G1707.01
Gene Type: Coding gene
Location: NC_025993.1 : 61127446-61128848 : negative

Family

Gene family: HOM04M000010
(3187 genes in 28 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
id	gene2510
name	LOC105032141
name	XM_010906503.2
pid	XP_010904805.1
product	transcription factor MYB3-like
tid	rna4080

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009651	IEA	PLAZA Integrative Orthology	response to salt stress	AT5G54230
GO:0006970	IEA	PLAZA Integrative Orthology	response to osmotic stress	AT4G21440
GO:0009611	IEA	PLAZA Integrative Orthology	response to wounding	AT4G21440
GO:0006355	IEA	PLAZA Integrative Orthology	regulation of transcription, DNA-templated	AT5G54230
GO:0009753	IEA	PLAZA Integrative Orthology	response to jasmonic acid	AT4G05100
GO:0009751	IEA	PLAZA Integrative Orthology	response to salicylic acid	AT5G54230
GO:0042335	IEA	PLAZA Integrative Orthology	cuticle development	AT4G28110
GO:0009723	IEA	PLAZA Integrative Orthology	response to ethylene	AT4G05100
GO:0009737	IEA	PLAZA Integrative Orthology	response to abscisic acid	AT5G54230
GO:0045892	IEA	PLAZA Integrative Orthology	negative regulation of transcription, DNA-templated	AT4G28110
GO:0010200	IEA	PLAZA Integrative Orthology	response to chitin	AT4G28110
GO:0080090	IEA	PLAZA Integrative Orthology	regulation of primary metabolic process	AT4G28110
GO:0016049	IEA	PLAZA Integrative Orthology	cell growth	AT4G28110
GO:0080091	IEA	PLAZA Integrative Orthology	regulation of raffinose metabolic process	AT4G28110

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	IEA	InterPro	DNA binding

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox domain-like

Mapman id	Description
15.5.2.1	.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)

No SignalP domains detected for this gene.