PLAZA 4.0 Monocots gene overview : EGU1423G0020

Gene: EGU1423G0020 (Elaeis guineensis)

Overview

Gene Identifier: EGU1423G0020
Transcript Identifier: EGU1423G0020.01
Gene Type: Coding gene
Location: NW_011551028.1 : 717321-719339 : positive

Family

Gene family: HOM04M000010
(3187 genes in 28 species)
specific family
Duplication type: Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
id	gene26360
name	LOC105033428
name	XM_010908236.2
pid	XP_010906538.1
product	myb-related protein Myb4-like
tid	rna42484

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0010200	IEA	PLAZA Integrative Orthology	response to chitin	AT3G23250
GO:0045893	IEA	PLAZA Integrative Orthology	positive regulation of transcription, DNA-templated	AT2G31180
GO:0050826	IEA	PLAZA Integrative Orthology	response to freezing	AT2G31180
GO:0009739	IEA	PLAZA Integrative Orthology	response to gibberellin	AT1G06180
GO:0009409	IEA	PLAZA Integrative Orthology	response to cold	AT2G31180
GO:0009733	IEA	PLAZA Integrative Orthology	response to auxin	AT3G23250
GO:0009723	IEA	PLAZA Integrative Orthology	response to ethylene	AT3G23250
GO:0009751	IEA	PLAZA Integrative Orthology	response to salicylic acid	AT2G31180
GO:0046686	IEA	PLAZA Integrative Orthology	response to cadmium ion	AT3G23250
GO:0009753	IEA	PLAZA Integrative Orthology	response to jasmonic acid	AT3G23250
GO:0009651	IEA	PLAZA Integrative Orthology	response to salt stress	AT3G23250

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	IEA	InterPro	DNA binding
GO:0003700	IEA	PLAZA Integrative Orthology	transcription factor activity, sequence-specific DNA binding	AT2G31180

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IEA	PLAZA Integrative Orthology	nucleus	AT2G31180

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox domain-like

Mapman id	Description
15.5.2.1	.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)

No SignalP domains detected for this gene.