PLAZA 4.0 Monocots gene overview : EGU1217G0014

Gene: EGU1217G0014 (Elaeis guineensis)

Overview

Gene Identifier: EGU1217G0014
Transcript Identifier: EGU1217G0014.01
Gene Type: Coding gene
Location: NW_011551350.1 : 83506-92638 : negative

Family

Gene family: HOM04M000071
(1149 genes in 29 species)
specific family
Subfamily: ORTHO04M000079
(590 genes in 29 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
id	gene27698
name	LOC105034865
name	XM_010910181.2
pid	XP_010908483.1
product	ABC transporter B family member 2, transcript variant X1
tid	rna44603

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006810	IEA	InterPro	transport
GO:0055085	IEA	InterPro	transmembrane transport

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005524	IEA	InterPro	ATP binding
GO:0042626	IEA	InterPro	ATPase activity, coupled to transmembrane movement of substances
GO:0016887	IEA	InterPro	ATPase activity

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0016021	IEA	InterPro	integral component of membrane
GO:0016020	IEA	PLAZA Integrative Orthology	membrane	AT4G25960
GO:0005739	IEA	PLAZA Integrative Orthology	mitochondrion	AT1G10680

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR011527	ABC transporter type 1, transmembrane domain
IPR003439	ABC transporter-like
IPR017871	ABC transporter, conserved site
IPR003593	AAA+ ATPase domain
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Mapman id	Description
24.1.3.1.1	.Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCB transporter

No SignalP domains detected for this gene.