PLAZA 4.0 Monocots gene overview : EGU0935G0224

Gene: EGU0935G0224 (Elaeis guineensis)

Overview

Gene Identifier: EGU0935G0224
Transcript Identifier: EGU0935G0224.01
Gene Type: Coding gene
Location: NC_025995.1 : 49615792-49617263 : positive

Family

Gene family: HOM04M000010
(3187 genes in 28 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
id	gene7041
name	LOC105042228
name	XM_010919348.2
pid	XP_010917650.1
product	protein ODORANT1
tid	rna11572

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:2000652	IEA	PLAZA Integrative Orthology	regulation of secondary cell wall biogenesis	AT5G16600
GO:0009737	IEA	PLAZA Integrative Orthology	response to abscisic acid	AT5G16600

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	IEA	InterPro	DNA binding

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IEA	PLAZA Integrative Orthology	nucleus	AT5G16600

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox domain-like

Mapman id	Description
15.5.2.1	.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)

No SignalP domains detected for this gene.