PLAZA 4.0 Monocots gene overview : EGU0387G0005

Gene: EGU0387G0005 (Elaeis guineensis)

Overview

Gene Identifier: EGU0387G0005
Transcript Identifier: EGU0387G0005.01
Gene Type: Coding gene
Location: NW_011550944.1 : 656930-658642 : positive

Family

Gene family: HOM04M000058
(1253 genes in 29 species)
specific family
Subfamily: ORTHO04M000023
(1102 genes in 29 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
id	gene25181
name	LOC105032167
name	XM_010906534.2
pid	XP_010904836.1
product	gibberellin receptor GID1C-like
tid	rna40568

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0008152	IEA	InterPro	metabolic process
GO:0010476	IEA	PLAZA Integrative Orthology	gibberellin mediated signaling pathway	AT5G27320
GO:0010325	IEA	PLAZA Integrative Orthology	raffinose family oligosaccharide biosynthetic process	AT5G27320
GO:0048530	IEA	PLAZA Integrative Orthology	fruit morphogenesis	AT5G27320
GO:0009939	IEA	PLAZA Integrative Orthology	positive regulation of gibberellic acid mediated signaling pathway	AT5G27320
GO:0048444	IEA	PLAZA Integrative Orthology	floral organ morphogenesis	AT5G27320
GO:0010629	IEA	PLAZA Integrative Orthology	negative regulation of gene expression	AT5G27320
GO:0009739	IEA	PLAZA Integrative Orthology	response to gibberellin	AT5G27320
GO:1905516	IEA	PLAZA Integrative Orthology	positive regulation of fertilization	AT3G05120
GO:0009860	IEA	PLAZA Integrative Orthology	pollen tube growth	AT5G23530

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0016787	IEA	InterPro	hydrolase activity
GO:0052689	IEA	PLAZA Integrative Orthology	carboxylic ester hydrolase activity	AT5G23530
GO:0010331	IEA	PLAZA Integrative Orthology	gibberellin binding	AT3G05120
GO:0005515	IEA	PLAZA Integrative Orthology	protein binding	AT5G27320

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005737	IEA	PLAZA Integrative Orthology	cytoplasm	AT3G05120
GO:0005634	IEA	PLAZA Integrative Orthology	nucleus	AT3G05120

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR029058	Alpha/Beta hydrolase fold
IPR013094	Alpha/beta hydrolase fold-3
IPR002168	Lipase, GDXG, putative histidine active site
IPR033140	Lipase, GDXG, putative serine active site

Mapman id	Description
11.6.2.1	.Phytohormone action.gibberellin.perception and signal transduction.receptor protein (GID1)

No SignalP domains detected for this gene.