PLAZA 4.0 Monocots gene overview : EGU0139G0693

Gene: EGU0139G0693 (Elaeis guineensis)

Overview

Gene Identifier: EGU0139G0693
Transcript Identifier: EGU0139G0693.01
Gene Type: Coding gene
Location: NC_026003.1 : 26091478-26104688 : positive

Family

Gene family: HOM04M000597
(208 genes in 27 species)
specific family
Subfamily: ORTHO04M000727
(151 genes in 27 species)
specific family
Duplication type: Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
id	gene18249
name	LOC105053792
name	XM_019853730.1
pid	XP_019709289.1
product	protein TPR2-like, transcript variant X1
tid	rna29683

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009733	IEA	PLAZA Tree-based Orthology	response to auxin	AT1G15750
GO:0009867	IEA	PLAZA Tree-based Orthology	jasmonic acid mediated signaling pathway	AT1G15750
GO:0010072	IEA	PLAZA Tree-based Orthology	primary shoot apical meristem specification	AT3G15880
GO:0010051	IEA	PLAZA Tree-based Orthology	xylem and phloem pattern formation	AT1G15750
GO:0045892	IEA	PLAZA Tree-based Orthology	negative regulation of transcription, DNA-templated	AT1G15750

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IEA	InterPro	protein binding
GO:0051879	IEA	PLAZA Tree-based Orthology	Hsp90 protein binding	AT3G16830
GO:0042803	IEA	PLAZA Tree-based Orthology	protein homodimerization activity	AT1G15750

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005829	IEA	PLAZA Tree-based Orthology	cytosol	AT1G15750
GO:0005634	IEA	PLAZA Tree-based Orthology	nucleus	AT1G15750

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR015943	WD40/YVTN repeat-like-containing domain
IPR001680	WD40 repeat
IPR019775	WD40 repeat, conserved site
IPR017986	WD40-repeat-containing domain
IPR006595	CTLH, C-terminal LisH motif
IPR006594	LIS1 homology motif
IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily

Mapman id	Description
11.2.2.2	.Phytohormone action.auxin.perception and signal transduction.transcriptional repressor (TPL)
15.5.53.1	.RNA biosynthesis.transcriptional regulation.transcriptional repression.transcriptional co-repressor (TPL/TPR)

No SignalP domains detected for this gene.