PLAZA 4.0 Monocots gene overview : EGU0139G0500

Gene: EGU0139G0500 (Elaeis guineensis)

Overview

Gene Identifier: EGU0139G0500
Transcript Identifier: EGU0139G0500.01
Gene Type: Coding gene
Location: NC_026003.1 : 25356951-25358363 : positive

Family

Gene family: HOM04M000010
(3187 genes in 28 species)
specific family
Duplication type: Tandem duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
id	gene18215
name	LOC105053827
name	XM_010935128.2
pid	XP_010933430.1
product	myb-related protein Zm1-like
tid	rna29619

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:2000652	IEA	PLAZA Integrative Orthology	regulation of secondary cell wall biogenesis	AT1G79180
GO:0071732	IEA	PLAZA Integrative Orthology	cellular response to nitric oxide	AT1G56160
GO:0071369	IEA	PLAZA Integrative Orthology	cellular response to ethylene stimulus	AT1G56160
GO:0045893	IEA	PLAZA Integrative Orthology	positive regulation of transcription, DNA-templated	AT1G79180
GO:0009809	IEA	PLAZA Integrative Orthology	lignin biosynthetic process	AT1G79180
GO:0009416	IEA	PLAZA Integrative Orthology	response to light stimulus	AT1G16490
GO:0009866	IEA	PLAZA Integrative Orthology	induced systemic resistance, ethylene mediated signaling pathway	AT1G56160
GO:0071281	IEA	PLAZA Integrative Orthology	cellular response to iron ion	AT1G56160
GO:0009751	IEA	PLAZA Integrative Orthology	response to salicylic acid	AT1G79180
GO:0009411	IEA	PLAZA Integrative Orthology	response to UV	AT1G79180
GO:0009753	IEA	PLAZA Integrative Orthology	response to jasmonic acid	AT1G79180

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	IEA	InterPro	DNA binding
GO:0003700	IEA	PLAZA Integrative Orthology	transcription factor activity, sequence-specific DNA binding	AT1G79180
GO:0043565	IEA	PLAZA Integrative Orthology	sequence-specific DNA binding	AT1G16490

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IEA	PLAZA Integrative Orthology	nucleus	AT1G79180

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox domain-like

Mapman id	Description
15.5.2.1	.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)

No SignalP domains detected for this gene.