PLAZA 4.0 Monocots gene overview : Cre16.g671000

Gene: Cre16.g671000 (Chlamydomonas reinhardtii)

Overview

Gene Identifier: Cre16.g671000
Transcript Identifier: Cre16.g671000.t1.2
Gene Type: Coding gene
Location: chromosome_16 : 4432142-4437063 : negative

Family

Gene family: HOM04M000058
(1253 genes in 29 species)
specific family
Subfamily: ORTHO04M007166
(34 genes in 29 species)
specific family

Descriptions

Description: Type-II NADH dehydrogenase
Putative type 2 NADH dehydrogenase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase [PMID: 15710684]

Identifiers

Type	Value
alias	g16299.t1
geneName	NDA5
id	Cre16.g671000.v5.5
pacid	30777236
tid	Cre16.g671000.t1.2.v5.5
tid	Cre16.g671000.t1.2

Toolbox

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
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...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0055114	IEA	InterPro	oxidation-reduction process
GO:0019646	IBA	UniProt	aerobic electron transport chain
GO:0042372	IBA	UniProt	phylloquinone biosynthetic process
GO:0008152	IEA	PLAZA Homology (enrichment)	metabolic process
GO:0071482	IEA	PLAZA Integrative Orthology	cellular response to light stimulus	AT5G08740

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0016491	IEA	UniProt	oxidoreductase activity
GO:0003955	IBA	UniProt	NAD(P)H dehydrogenase (quinone) activity
GO:0003954	IEA	UniProt	NADH dehydrogenase activity
GO:0016787	IEA	PLAZA Homology (enrichment)	hydrolase activity

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009507	IBA	UniProt	chloroplast
GO:0005739	IBA	UniProt	mitochondrion
GO:0010287	IEA	PLAZA Integrative Orthology	plastoglobule	AT5G08740
GO:0009534	IEA	PLAZA Integrative Orthology	chloroplast thylakoid	AT5G08740
GO:0031304	IEA	PLAZA Integrative Orthology	intrinsic component of mitochondrial inner membrane	AT5G08740
GO:0005618	IEA	PLAZA Integrative Orthology	cell wall	AT5G08740

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR023753	FAD/NAD(P)-binding domain

Mapman id	Description
2.4.2.1.3	.Cellular respiration.oxidative phosphorylation.alternative NAD(P)H dehydrogenase activities.type-II NAD(P)H dehydrogenase activities.NAD(P)H dehydrogenase (NDC)

No SignalP domains detected for this gene.