PLAZA 4.0 Monocots gene overview : Cre11.g467753

Gene: Cre11.g467753 (Chlamydomonas reinhardtii)

Overview

Gene Identifier: Cre11.g467753
Transcript Identifier: Cre11.g467753.t1.1
Gene Type: Coding gene
Location: chromosome_11 : 1540392-1542974 : negative

Family

Gene family: HOM04M063871
(orphan gene)
specific family

Descriptions

Description: Heme oxygenase
Heme oxygenase; HMOX; HO; Catalyzes the degradation of heme to bilirubin, it is essential for recycling of iron from heme. Heme is used as a substrate and cofactor for its own degradation to biliverdin, iron, and carbon monoxide; Involved in the synthesis

Identifiers

Type	Value
alias	g11682.t1
geneName	HMO2
id	Cre11.g467753.v5.5
pacid	30775592
tid	Cre11.g467753.t1.1.v5.5
tid	Cre11.g467753.t1.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006788	IEA	InterPro	heme oxidation
GO:0055114	IEA	InterPro	oxidation-reduction process

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004392	IEA	InterPro	heme oxygenase (decyclizing) activity

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR016053	Haem oxygenase-like
IPR016084	Haem oxygenase-like, multi-helical
IPR002051	Haem oxygenase

Mapman id	Description
35.2	not assigned.not annotated

No SignalP domains detected for this gene.