Gene: Cre07.g319900 (Chlamydomonas reinhardtii)

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Gene Identifier
Cre07.g319900
Transcript Identifier
Cre07.g319900.t1.1
Gene Type
Coding gene
Location
chromosome_7 : 1092756-1093881 : negative

Family

Gene family
HOM04M005281
(37 genes in 28 species)
specific family

Descriptions

Description
Homologue of S. cerevisiae Rrp40, which is a core component of the exosome, a complex of multiple 3'-5' exoribonucleases involved in RNA processing and RNA degradation. Discussed by Zimmer et al. 2008 [PMID: 18493045]
3'-5' Exonuclease component of the Exosome

Identifiers

Type Value
aliasg7398.t1
geneNameRRP40
idCre07.g319900.v5.5
pacid30774439
tidCre07.g319900.t1.1.v5.5
tidCre07.g319900.t1.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0071034 IBAUniProtCUT catabolic process
GO:0043928 IBAUniProtexonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO:0000467 IBAUniProtexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0071035 IBAUniProtnuclear polyadenylation-dependent rRNA catabolic process
GO:0071038 IBAUniProtnuclear polyadenylation-dependent tRNA catabolic process
GO:0071049 IBAUniProtnuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription
GO:0034427 IBAUniProtnuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0071051 IBAUniProtpolyadenylation-dependent snoRNA 3'-end processing
GO:0034475 IBAUniProtU4 snRNA 3'-end processing

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003723 IBA, IEAUniProtRNA binding
GO:0003676 IEAInterPronucleic acid binding
GO:0004527 IEAUniProtexonuclease activity

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0000178 IEAInterProexosome (RNase complex)
GO:0000177 IBAUniProtcytoplasmic exosome (RNase complex)
GO:0000176 IBAUniProtnuclear exosome (RNase complex)

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR026699Exosome complex RNA-binding protein 1/RRP40/RRP4
IPR004088K Homology domain, type 1
IPR003029S1 domain
IPR022967RNA-binding domain, S1
IPR012340Nucleic acid-binding, OB-fold

Mapman id Description
16.8.1.1.1.RNA processing.RNA surveillance.exosome complex.EXO9 core complex.component RRP40
No SignalP domains detected for this gene.