Gene: Cre02.g141000 (Chlamydomonas reinhardtii)

Overview top

Gene Identifier
Cre02.g141000
Transcript Identifier
Cre02.g141000.t1.1
Gene Type
Coding gene
Location
chromosome_2 : 7939586-7952729 : positive

Family

Gene family
HOM04M000371
(307 genes in 28 species)
specific family
Subfamily
ORTHO04M000440
(210 genes in 28 species)
specific family

Descriptions

Description
Dicer-like protein
Dicer-like protein presumably involved in posttranscriptional gene silencing/RNA interference. ChromoDB DCL3401

Identifiers

Type Value
aliasg2670.t1
geneNameDCL1
idCre02.g141000.v5.5
pacid30785779
tidCre02.g141000.t1.1.v5.5
tidCre02.g141000.t1.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006396 IEAUniProtRNA processing
GO:0030422 IBAUniProtproduction of siRNA involved in RNA interference
GO:0010267 IEAPLAZA Integrative Orthologyproduction of ta-siRNAs involved in RNA interferenceAT5G20320
GO:0035279 IEAPLAZA Integrative OrthologymRNA cleavage involved in gene silencing by miRNAAT1G01040
GO:0010216 IEAPLAZA Integrative Orthologymaintenance of DNA methylationAT5G20320
GO:0010228 IEAPLAZA Integrative Orthologyvegetative to reproductive phase transition of meristemAT1G01040
GO:2000034 IEAPLAZA Integrative Orthologyregulation of seed maturationAT1G01040
GO:0051607 IEAPLAZA Integrative Orthologydefense response to virusAT5G20320
GO:0010599 IEAPLAZA Integrative Orthologyproduction of lsiRNA involved in RNA interferenceAT5G20320
GO:0009908 IEAPLAZA Integrative Orthologyflower developmentAT1G01040
GO:0009616 IEAPLAZA Integrative Orthologyvirus induced gene silencingAT5G20320
GO:0051214 IEAPLAZA Integrative OrthologyRNA virus induced gene silencingAT5G20320
GO:0006353 IEAPLAZA Integrative OrthologyDNA-templated transcription, terminationAT5G20320
GO:0048317 IEAPLAZA Integrative Orthologyseed morphogenesisAT1G01040
GO:0000911 IEAPLAZA Integrative Orthologycytokinesis by cell plate formationAT1G01040
GO:0010050 IEAPLAZA Integrative Orthologyvegetative phase changeAT5G20320
GO:0009880 IEAPLAZA Integrative Orthologyembryonic pattern specificationAT1G01040
GO:0035196 IEAPLAZA Integrative Orthologyproduction of miRNAs involved in gene silencing by miRNAAT5G20320
GO:0031053 IEAPLAZA Integrative Orthologyprimary miRNA processingAT1G01040
GO:0010098 IEAPLAZA Integrative Orthologysuspensor developmentAT1G01040

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004525 IBA, IEAUniProtribonuclease III activity
GO:0016891 IEAInterProendoribonuclease activity, producing 5'-phosphomonoesters
GO:0003676 IEAInterPronucleic acid binding
GO:0005524 IEAUniProtATP binding
GO:0003723 IBA, IEAUniProtRNA binding
GO:0003725 IEAPLAZA Integrative Orthologydouble-stranded RNA bindingAT3G43920
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT5G20320

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737 IBAUniProtcytoplasm
GO:0005634 IBAUniProtnucleus
GO:0016442 IBAUniProtRISC complex
GO:0010445 IEAPLAZA Integrative Orthologynuclear dicing bodyAT1G01040
GO:0005730 IEAPLAZA Integrative OrthologynucleolusAT3G43920

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000999Ribonuclease III domain
IPR005034Dicer dimerisation domain
IPR001650Helicase, C-terminal
IPR011545DEAD/DEAH box helicase domain
IPR014001Helicase superfamily 1/2, ATP-binding domain
IPR027417P-loop containing nucleoside triphosphate hydrolase

Mapman id Description
35.1not assigned.annotated
No SignalP domains detected for this gene.