PLAZA 4.0 Monocots gene overview : Bradi4g04089

Gene: Bradi4g04089 (Brachypodium distachyon)

Overview

Gene Identifier: Bradi4g04089
Transcript Identifier: Bradi4g04089.1
Gene Type: Coding gene
Location: Bd4 : 3315692-3324487 : positive

Family

Gene family: HOM04M000077
(1050 genes in 27 species)
specific family
Subfamily: ORTHO04M000084
(563 genes in 25 species)
specific family
Duplication type: Tandem duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
id	Bradi4g04089.v3.1
pacid	32784037
tid	Bradi4g04089.1.v3.1
tid	Bradi4g04089.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006468	IEA	PLAZA Homology (enrichment)	protein phosphorylation

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004672	IEA	PLAZA Homology (enrichment)	protein kinase activity
GO:0005524	IEA	PLAZA Homology (enrichment)	ATP binding

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR024788	Malectin-like carbohydrate-binding domain

Mapman id	Description
35.1	not assigned.annotated

No SignalP domains detected for this gene.