PLAZA 4.0 Monocots gene overview : Bradi3g49190

Gene: Bradi3g49190 (Brachypodium distachyon)

Overview

Gene Identifier: Bradi3g49190
Transcript Identifier: Bradi3g49190.1
Gene Type: Coding gene
Location: Bd3 : 50319379-50320258 : negative

Family

Gene family: HOM04M000010
(3187 genes in 28 species)
specific family
Duplication type: Tandem duplicate and Block duplicate

Descriptions

Description: MYB transcrition factor

Identifiers

Type	Value
alias	BdMYB72
id	Bradi3g49190.v3.1
pacid	32817839
tid	Bradi3g49190.1.v3.1
tid	Bradi3g49190.1
ancestorIdentifier	Bradi3g49190.v2.1
ancestorIdentifier	Bradi3g49190.1.v2.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:2000652	IEA	PLAZA Integrative Orthology	regulation of secondary cell wall biogenesis	AT1G16490
GO:0045893	IEA	PLAZA Integrative Orthology	positive regulation of transcription, DNA-templated	AT1G16490
GO:0010200	IEA	PLAZA Integrative Orthology	response to chitin	AT3G23250
GO:0009809	IEA	PLAZA Integrative Orthology	lignin biosynthetic process	AT1G16490
GO:0009739	IEA	PLAZA Integrative Orthology	response to gibberellin	AT1G06180
GO:0009723	IEA	PLAZA Integrative Orthology	response to ethylene	AT3G23250
GO:0009733	IEA	PLAZA Integrative Orthology	response to auxin	AT3G23250
GO:0009416	IEA	PLAZA Integrative Orthology	response to light stimulus	AT1G16490
GO:0009751	IEA	PLAZA Integrative Orthology	response to salicylic acid	AT1G06180
GO:0046686	IEA	PLAZA Integrative Orthology	response to cadmium ion	AT3G23250
GO:0009753	IEA	PLAZA Integrative Orthology	response to jasmonic acid	AT3G23250
GO:0009651	IEA	PLAZA Integrative Orthology	response to salt stress	AT3G23250

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	IEA	InterPro	DNA binding
GO:0003700	IEA	PLAZA Integrative Orthology	transcription factor activity, sequence-specific DNA binding	AT1G16490
GO:0043565	IEA	PLAZA Integrative Orthology	sequence-specific DNA binding	AT1G16490

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IEA	PLAZA Integrative Orthology	nucleus	AT1G16490

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox domain-like

Mapman id	Description
15.5.2.1	.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)

No SignalP domains detected for this gene.