PLAZA 4.0 Monocots gene overview : Aco029105

Gene: Aco029105 (Ananas comosus)

Overview

Gene Identifier: Aco029105
Transcript Identifier: Aco029105.1
Gene Type: Coding gene
Location: scaffold_1628 : 4774-9578 : positive

Family

Gene family: HOM04M000020
(1960 genes in 29 species)
specific family
Subfamily: ORTHO04M000655
(163 genes in 29 species)
specific family

Descriptions

Description: kinesin-like protein 1

Identifiers

Type	Value
id	Aco029105.v3
pacid	33048521
tid	Aco029105.1.v3
tid	Aco029105.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0007018	IEA	InterPro	microtubule-based movement

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003777	IEA	InterPro	microtubule motor activity
GO:0005524	IEA	InterPro	ATP binding
GO:0008017	IEA	InterPro	microtubule binding

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009506	IEA	PLAZA Integrative Orthology	plasmodesma	AT5G66310

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001752	Kinesin motor domain
IPR021881	NPK1-activating kinesin-like protein, C-terminal
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Mapman id	Description
20.1.3.6	.Cytoskeleton organisation.microtubular network.Kinesin microtubule-based motor protein activities.motor protein (Kinesin-7)

No SignalP domains detected for this gene.