PLAZA 4.0 Monocots gene overview : Aco028927

Gene: Aco028927 (Ananas comosus)

Overview

Gene Identifier: Aco028927
Transcript Identifier: Aco028927.1
Gene Type: Coding gene
Location: scaffold_1514 : 23872-24969 : positive

Family

Gene family: HOM04M000036
(1581 genes in 29 species)
specific family
Subfamily: ORTHO04M000245
(304 genes in 29 species)
specific family

Descriptions

Description: Ras-related protein Rab-25

Identifiers

Type	Value
id	Aco028927.v3
pacid	33044166
tid	Aco028927.1.v3
tid	Aco028927.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0042546	IEA	PLAZA Integrative Orthology	cell wall biogenesis	AT1G06400
GO:0009733	IEA	PLAZA Integrative Orthology	response to auxin	AT1G06400
GO:0006886	IEA	PLAZA Integrative Orthology	intracellular protein transport	AT1G16920
GO:0060627	IEA	PLAZA Integrative Orthology	regulation of vesicle-mediated transport	AT1G16920
GO:0042538	IEA	PLAZA Integrative Orthology	hyperosmotic salinity response	AT1G16920

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003924	IEA	InterPro	GTPase activity
GO:0005525	IEA	InterPro	GTP binding

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005886	IEA	PLAZA Integrative Orthology	plasma membrane	AT1G06400
GO:0005773	IEA	PLAZA Integrative Orthology	vacuole	AT1G16920
GO:0005774	IEA	PLAZA Integrative Orthology	vacuolar membrane	AT1G16920

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001806	Small GTPase superfamily
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR005225	Small GTP-binding protein domain

Mapman id	Description
22.8.1.1	.Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase activities.A-class RAB GTPase

No SignalP domains detected for this gene.