Gene: Aco022811 (Ananas comosus)

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Gene Identifier
Aco022811
Transcript Identifier
Aco022811.1
Gene Type
Coding gene
Location
LG03 : 8587247-8587759 : positive

Family

Gene family
HOM04M001833
(83 genes in 27 species)
specific family

Descriptions

Description
Cold shock protein

Identifiers

Type Value
idAco022811.v3
pacid33031334
tidAco022811.1.v3
tidAco022811.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355 IEAInterProregulation of transcription, DNA-templated
GO:0010228 IEAPLAZA Integrative Orthologyvegetative to reproductive phase transition of meristemAT4G38680
GO:0031564 IEAPLAZA Integrative Orthologytranscription antiterminationAT4G38680
GO:0009737 IEAPLAZA Integrative Orthologyresponse to abscisic acidAT4G38680
GO:0009845 IEAPLAZA Integrative Orthologyseed germinationAT4G38680
GO:0043457 IEAPLAZA Integrative Orthologyregulation of cellular respirationAT4G38680
GO:0009269 IEAPLAZA Integrative Orthologyresponse to desiccationAT4G38680
GO:0006970 IEAPLAZA Integrative Orthologyresponse to osmotic stressAT4G38680
GO:0010154 IEAPLAZA Integrative Orthologyfruit developmentAT2G21060
GO:0032508 IEAPLAZA Integrative OrthologyDNA duplex unwindingAT4G38680
GO:0048443 IEAPLAZA Integrative Orthologystamen developmentAT4G38680
GO:0009414 IEAPLAZA Integrative Orthologyresponse to water deprivationAT4G38680
GO:0009409 IEAPLAZA Integrative Orthologyresponse to coldAT4G38680
GO:0009631 IEAPLAZA Integrative Orthologycold acclimationAT4G38680
GO:0048316 IEAPLAZA Integrative Orthologyseed developmentAT4G38680
GO:0009793 IEAPLAZA Integrative Orthologyembryo development ending in seed dormancyAT2G21060
GO:0009651 IEAPLAZA Integrative Orthologyresponse to salt stressAT4G38680

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677 IEAInterProDNA binding
GO:0003676 IEAInterPronucleic acid binding
GO:0008270 IEAInterProzinc ion binding
GO:0003729 IEAPLAZA Integrative OrthologymRNA bindingAT4G38680
GO:0001072 IEAPLAZA Integrative Orthologytranscription antitermination factor activity, RNA bindingAT4G38680
GO:0005507 IEAPLAZA Integrative Orthologycopper ion bindingAT4G38680
GO:0003723 IEAPLAZA Integrative OrthologyRNA bindingAT4G38680
GO:0005524 IEAPLAZA Integrative OrthologyATP bindingAT4G38680
GO:0003697 IEAPLAZA Integrative Orthologysingle-stranded DNA bindingAT4G38680
GO:0003690 IEAPLAZA Integrative Orthologydouble-stranded DNA bindingAT4G38680

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005739 IEAPLAZA Integrative OrthologymitochondrionAT4G38680
GO:0005737 IEAPLAZA Integrative OrthologycytoplasmAT4G38680
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT4G38680
GO:0005886 IEAPLAZA Integrative Orthologyplasma membraneAT4G38680
GO:0005829 IEAPLAZA Integrative OrthologycytosolAT4G38680
GO:0005730 IEAPLAZA Integrative OrthologynucleolusAT4G38680

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR002059Cold-shock protein, DNA-binding
IPR001878Zinc finger, CCHC-type
IPR019844Cold-shock conserved site
IPR011129Cold shock domain
IPR012340Nucleic acid-binding, OB-fold

Mapman id Description
16.7.1.RNA processing.RNA chaperone activities.RNA chaperone (CSP)
26.4.3.2.External stimuli response.temperature.cold response.mRNA chaperone (CSD)
No SignalP domains detected for this gene.