PLAZA 4.0 Monocots gene overview : Aco019379

Gene: Aco019379 (Ananas comosus)

Overview

Gene Identifier: Aco019379
Transcript Identifier: Aco019379.1
Gene Type: Coding gene
Location: LG05 : 6560778-6562424 : negative

Family

Gene family: HOM04M000014
(2446 genes in 27 species)
specific family
Subfamily: ORTHO04M000140
(411 genes in 27 species)
specific family
Duplication type: Tandem duplicate

Descriptions

Description: NAC domain containing protein 32

Identifiers

Type	Value
id	Aco019379.v3
pacid	33054707
tid	Aco019379.1.v3
tid	Aco019379.1

Toolbox

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006355	IEA	InterPro	regulation of transcription, DNA-templated
GO:0010099	IEA	PLAZA Integrative Orthology	regulation of photomorphogenesis	AT5G08790
GO:0009793	IEA	PLAZA Integrative Orthology	embryo development ending in seed dormancy	AT5G08790
GO:0010150	IEA	PLAZA Integrative Orthology	leaf senescence	AT5G08790
GO:0008361	IEA	PLAZA Integrative Orthology	regulation of cell size	AT5G08790
GO:0009611	IEA	PLAZA Integrative Orthology	response to wounding	AT1G01720
GO:0009753	IEA	PLAZA Integrative Orthology	response to jasmonic acid	AT5G08790
GO:1900057	IEA	PLAZA Integrative Orthology	positive regulation of leaf senescence	AT1G77450
GO:0009620	IEA	PLAZA Integrative Orthology	response to fungus	AT5G08790
GO:0009751	IEA	PLAZA Integrative Orthology	response to salicylic acid	AT5G08790
GO:0009416	IEA	PLAZA Integrative Orthology	response to light stimulus	AT5G08790
GO:0009788	IEA	PLAZA Integrative Orthology	negative regulation of abscisic acid-activated signaling pathway	AT1G01720
GO:0009744	IEA	PLAZA Integrative Orthology	response to sucrose	AT5G08790
GO:0001666	IEA	PLAZA Integrative Orthology	response to hypoxia	AT5G63790
GO:0045892	IEA	PLAZA Integrative Orthology	negative regulation of transcription, DNA-templated	AT5G08790
GO:0045893	IEA	PLAZA Integrative Orthology	positive regulation of transcription, DNA-templated	AT5G08790
GO:0019760	IEA	PLAZA Integrative Orthology	glucosinolate metabolic process	AT5G63790

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	IEA	InterPro	DNA binding
GO:0044212	IEA	PLAZA Integrative Orthology	transcription regulatory region DNA binding	AT5G63790
GO:0043565	IEA	PLAZA Integrative Orthology	sequence-specific DNA binding	AT5G63790
GO:0043424	IEA	PLAZA Integrative Orthology	protein histidine kinase binding	AT5G08790
GO:0005515	IEA	PLAZA Integrative Orthology	protein binding	AT5G63790

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IEA	PLAZA Integrative Orthology	nucleus	AT5G08790
GO:0009507	IEA	PLAZA Integrative Orthology	chloroplast	AT5G63790

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR003441	NAC domain

Mapman id	Description
15.5.17	.RNA biosynthesis.transcriptional regulation.transcription factor (NAC)

No SignalP domains detected for this gene.