PLAZA 4.0 Monocots gene overview : Aco016126

Gene: Aco016126 (Ananas comosus)

Overview

Gene Identifier: Aco016126
Transcript Identifier: Aco016126.1
Gene Type: Coding gene
Location: LG21 : 1597973-1607221 : negative

Family

Gene family: HOM04M000020
(1960 genes in 29 species)
specific family
Subfamily: ORTHO04M001718
(87 genes in 28 species)
specific family

Descriptions

Description: Kinesin-like protein

Identifiers

Type	Value
id	Aco016126.v3
pacid	33032313
tid	Aco016126.1.v3
tid	Aco016126.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0007018	IEA	InterPro	microtubule-based movement
GO:0080175	IEA	PLAZA Integrative Orthology	phragmoplast microtubule organization	AT4G14150
GO:0000914	IEA	PLAZA Integrative Orthology	phragmoplast assembly	AT4G14150
GO:0055046	IEA	PLAZA Integrative Orthology	microgametogenesis	AT4G14150
GO:0007112	IEA	PLAZA Integrative Orthology	male meiosis cytokinesis	AT4G14150

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003777	IEA	InterPro	microtubule motor activity
GO:0005524	IEA	InterPro	ATP binding
GO:0008017	IEA	InterPro	microtubule binding
GO:0005515	IEA	PLAZA Integrative Orthology	protein binding	AT4G14150
GO:0008574	IEA	PLAZA Integrative Orthology	ATP-dependent microtubule motor activity, plus-end-directed	AT4G14150

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009524	IEA	PLAZA Integrative Orthology	phragmoplast	AT4G14150

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001752	Kinesin motor domain
IPR019821	Kinesin motor domain, conserved site
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Mapman id	Description
20.1.3.10	.Cytoskeleton organisation.microtubular network.Kinesin microtubule-based motor protein activities.motor protein (Kinesin-12)

No SignalP domains detected for this gene.