PLAZA 4.0 Monocots gene overview : Aco015615

Gene: Aco015615 (Ananas comosus)

Overview

Gene Identifier: Aco015615
Transcript Identifier: Aco015615.1
Gene Type: Coding gene
Location: LG19 : 1209021-1209896 : positive

Family

Gene family: HOM04M000052
(1376 genes in 27 species)
specific family

Descriptions

Description: GRAS family transcription factor

Identifiers

Type	Value
id	Aco015615.v3
pacid	33052035
tid	Aco015615.1.v3
tid	Aco015615.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0010223	IEA	InterPro	secondary shoot formation

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IEA	InterPro	nucleus

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR030017	Scarecrow-like protein 18/MONOCULM 1
IPR005202	Transcription factor GRAS

Mapman id	Description
35.2	not assigned.not annotated

No SignalP domains detected for this gene.