Gene: Aco013637 (Ananas comosus)

Overview top

Gene Identifier
Aco013637
Transcript Identifier
Aco013637.1
Gene Type
Coding gene
Location
LG13 : 11580548-11585075 : positive

Family

Gene family
HOM04M001168
(122 genes in 27 species)
specific family
Subfamily
ORTHO04M001284
(103 genes in 27 species)
specific family

Descriptions

Description
Phytochrome

Identifiers

Type Value
idAco013637.v3
pacid33053393
tidAco013637.1.v3
tidAco013637.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355 IEAInterProregulation of transcription, DNA-templated
GO:0009584 IEAInterProdetection of visible light
GO:0018298 IEAInterProprotein-chromophore linkage
GO:0007165 IEAInterProsignal transduction
GO:0009585 IEAInterProred, far-red light phototransduction
GO:0017006 IEAInterProprotein-tetrapyrrole linkage
GO:0010201 IEAPLAZA Integrative Orthologyresponse to continuous far red light stimulus by the high-irradiance response systemAT1G09570
GO:0010202 IEAPLAZA Tree-based Orthologyresponse to low fluence red light stimulusAT2G18790
GO:2000028 IEAPLAZA Tree-based Orthologyregulation of photoperiodism, floweringAT2G18790
GO:0010244 IEAPLAZA Tree-based Orthologyresponse to low fluence blue light stimulus by blue low-fluence systemAT2G18790
GO:0031347 IEAPLAZA Tree-based Orthologyregulation of defense responseAT2G18790
GO:0010029 IEAPLAZA Tree-based Orthologyregulation of seed germinationAT2G18790
GO:0015979 IEAPLAZA Tree-based OrthologyphotosynthesisAT2G18790
GO:0017012 IEAPLAZA Tree-based Orthologyprotein-phytochromobilin linkageAT2G18790
GO:0010148 IEAPLAZA Tree-based OrthologytranspirationAT2G18790
GO:0010203 IEAPLAZA Integrative Orthologyresponse to very low fluence red light stimulusAT1G09570
GO:0009638 IEAPLAZA Integrative OrthologyphototropismAT1G09570
GO:0009867 IEAPLAZA Tree-based Orthologyjasmonic acid mediated signaling pathwayAT2G18790
GO:0009687 IEAPLAZA Tree-based Orthologyabscisic acid metabolic processAT2G18790
GO:0000724 IEAPLAZA Tree-based Orthologydouble-strand break repair via homologous recombinationLOC_Os03g54084
GO:0009266 IEAPLAZA Tree-based Orthologyresponse to temperature stimulusAT2G18790
GO:0009640 IEAPLAZA Integrative OrthologyphotomorphogenesisAT1G09570
GO:0010374 IEAPLAZA Tree-based Orthologystomatal complex developmentAT2G18790
GO:0017148 IEAPLAZA Integrative Orthologynegative regulation of translationAT1G09570
GO:0010017 IEAPLAZA Tree-based Orthologyred or far-red light signaling pathwayAT4G16250
GO:0010617 IEAPLAZA Tree-based Orthologycircadian regulation of calcium ion oscillationAT2G18790
GO:0046685 IEAPLAZA Integrative Orthologyresponse to arsenic-containing substanceAT1G09570
GO:0010218 IEAPLAZA Integrative Orthologyresponse to far red lightAT1G09570
GO:0045892 IEAPLAZA Tree-based Orthologynegative regulation of transcription, DNA-templatedAT2G18790
GO:0009649 IEAPLAZA Tree-based Orthologyentrainment of circadian clockAT2G18790
GO:0009409 IEAPLAZA Tree-based Orthologyresponse to coldAT2G18790
GO:0006325 IEAPLAZA Tree-based Orthologychromatin organizationAT2G18790
GO:0009630 IEAPLAZA Integrative OrthologygravitropismAT1G09570
GO:0010161 IEAPLAZA Integrative Orthologyred light signaling pathwayAT1G09570
GO:0007131 IEAPLAZA Tree-based Orthologyreciprocal meiotic recombinationLOC_Os03g54084

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515 IEAInterProprotein binding
GO:0000155 IEAInterProphosphorelay sensor kinase activity
GO:0009881 IEAInterProphotoreceptor activity
GO:0042803 IEAInterProprotein homodimerization activity
GO:0009883 IEAPLAZA Integrative Orthologyred or far-red light photoreceptor activityAT1G09570
GO:0004672 IEAPLAZA Integrative Orthologyprotein kinase activityAT1G09570
GO:0042802 IEAPLAZA Integrative Orthologyidentical protein bindingAT1G09570
GO:0003729 IEAPLAZA Integrative OrthologymRNA bindingAT1G09570
GO:1990841 IEAPLAZA Tree-based Orthologypromoter-specific chromatin bindingAT2G18790
GO:0031517 IEAPLAZA Tree-based Orthologyred light photoreceptor activityAT2G18790
GO:0031516 IEAPLAZA Integrative Orthologyfar-red light photoreceptor activityAT1G09570
GO:0043565 IEAPLAZA Tree-based Orthologysequence-specific DNA bindingAT2G18790

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737 IEAPLAZA Integrative OrthologycytoplasmAT1G09570
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT1G09570
GO:0005829 IEAPLAZA Tree-based OrthologycytosolAT2G18790
GO:0016604 IEAPLAZA Integrative Orthologynuclear bodyAT1G09570

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000014PAS domain
IPR003594Histidine kinase-like ATPase, C-terminal domain
IPR029016GAF domain-like
IPR013767PAS fold
IPR013654PAS fold-2
IPR013515Phytochrome, central region
IPR003018GAF domain
IPR003661Signal transduction histidine kinase, dimerisation/phosphoacceptor domain
IPR012129Phytochrome A/B/C/D/E
IPR001294Phytochrome
IPR013516Phytochrome chromophore binding site
IPR016132Phytochrome chromophore attachment domain
IPR005467Histidine kinase domain
IPR001610PAC motif

Mapman id Description
26.1.1.1.External stimuli response.light.red/far red light.phytochrome photoreceptor (PHY)
No SignalP domains detected for this gene.