Gene: Aco006546 (Ananas comosus)

Overview top

Gene Identifier
Aco006546
Transcript Identifier
Aco006546.1
Gene Type
Coding gene
Location
LG14 : 1441608-1472756 : positive

Family

Gene family
HOM04M000739
(176 genes in 29 species)
specific family
Subfamily
ORTHO04M005768
(39 genes in 29 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
DNA ligase 6.5.1.1

Identifiers

Type Value
idAco006546.v3
pacid33038984
tidAco006546.1.v3
tidAco006546.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006281 IEAInterProDNA repair
GO:0006310 IEAInterProDNA recombination
GO:0051103 IEAInterProDNA ligation involved in DNA repair
GO:0071897 IEAInterProDNA biosynthetic process
GO:0010165 IEAPLAZA Integrative Orthologyresponse to X-rayAT5G57160
GO:0015074 IEAPLAZA Integrative OrthologyDNA integrationAT5G57160
GO:0000723 IEAPLAZA Integrative Orthologytelomere maintenanceAT5G57160
GO:0006974 IEAPLAZA Integrative Orthologycellular response to DNA damage stimulusAT5G57160
GO:0006303 IEAPLAZA Integrative Orthologydouble-strand break repair via nonhomologous end joiningAT5G57160
GO:0006302 IEAPLAZA Integrative Orthologydouble-strand break repairAT5G57160

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677 IEAInterProDNA binding
GO:0003910 IEAInterProDNA ligase (ATP) activity
GO:0005524 IEAInterProATP binding
GO:0003909 IEAInterProDNA ligase activity
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT5G57160

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009506 IEAPLAZA Integrative OrthologyplasmodesmaAT5G57160
GO:0048046 IEAPLAZA Integrative OrthologyapoplastAT5G57160
GO:0005886 IEAPLAZA Tree-based Orthologyplasma membraneAT1G78880

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001357BRCT domain
IPR012308DNA ligase, ATP-dependent, N-terminal
IPR012310DNA ligase, ATP-dependent, central
IPR012309DNA ligase, ATP-dependent, C-terminal
IPR016059DNA ligase, ATP-dependent, conserved site
IPR012340Nucleic acid-binding, OB-fold
IPR000977DNA ligase, ATP-dependent

Mapman id Description
14.4.2.1.DNA damage response.nonhomologous end-joining (NHEJ) repair.LIG4-XRCC4 ligase complex.DNA ligase component LIG4
21.1.1.3.1.Cell wall organisation.cellulose.cellulose synthase complex (CSC).CSC trafficking.regulatory protein (SHOU4)
No SignalP domains detected for this gene.