Gene: Aco005650 (Ananas comosus)

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Gene Identifier
Aco005650
Transcript Identifier
Aco005650.1
Gene Type
Coding gene
Location
LG11 : 11986223-11987245 : negative

Family

Gene family
HOM04M000305
(342 genes in 29 species)
specific family
Subfamily
ORTHO04M000813
(140 genes in 29 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
Zinc finger CCCH domain-containing protein

Identifiers

Type Value
idAco005650.v3
pacid33037913
tidAco005650.1.v3
tidAco005650.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0061157 IEAPLAZA Integrative OrthologymRNA destabilizationAT2G25900
GO:0010187 IEAPLAZA Integrative Orthologynegative regulation of seed germinationAT1G03790
GO:0006355 IEAPLAZA Integrative Orthologyregulation of transcription, DNA-templatedAT2G25900
GO:0006979 IEAPLAZA Integrative Orthologyresponse to oxidative stressAT2G19810

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0046872 IEAInterPrometal ion binding
GO:0003677 IEAPLAZA Integrative OrthologyDNA bindingAT2G25900
GO:0003723 IEAPLAZA Integrative OrthologyRNA bindingAT2G25900
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT1G03790
GO:0003727 IEAPLAZA Integrative Orthologysingle-stranded RNA bindingAT2G25900

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0010494 IEAPLAZA Integrative Orthologycytoplasmic stress granuleAT5G44260
GO:0000932 IEAPLAZA Integrative OrthologyP-bodyAT5G44260
GO:0005886 IEAPLAZA Integrative Orthologyplasma membraneAT4G29190
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT1G03790
GO:0005737 IEAPLAZA Integrative OrthologycytoplasmAT2G25900

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000571Zinc finger, CCCH-type

Mapman id Description
16.9.2.RNA processing.mRNA sequestration.mRNA-binding regulatory factor (TZF)
No SignalP domains detected for this gene.