PLAZA 4.0 Monocots gene overview : Aco004865

Gene: Aco004865 (Ananas comosus)

Overview

Gene Identifier: Aco004865
Transcript Identifier: Aco004865.1
Gene Type: Coding gene
Location: LG07 : 400542-404267 : negative

Family

Gene family: HOM04M000001
(8521 genes in 28 species)
specific family

Descriptions

Description: Pentatricopeptide repeat PPR superfamily protein

Identifiers

Type	Value
id	Aco004865.v3
pacid	33048666
tid	Aco004865.1.v3
tid	Aco004865.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IEA	PLAZA Homology (enrichment)	protein binding

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

No InterPro domains detected for this gene.

Mapman id	Description
35.2	not assigned.not annotated

No SignalP domains detected for this gene.