Gene: Aco004827 (Ananas comosus)

Overview top

Gene Identifier
Aco004827
Transcript Identifier
Aco004827.1
Gene Type
Coding gene
Location
LG07 : 145527-153581 : positive

Family

Gene family
HOM04M001168
(122 genes in 27 species)
specific family
Subfamily
ORTHO04M001284
(103 genes in 27 species)
specific family

Descriptions

Description
Phytochrome

Identifiers

Type Value
idAco004827.v3
pacid33048934
tidAco004827.1.v3
tidAco004827.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355 IEAInterProregulation of transcription, DNA-templated
GO:0007165 IEAInterProsignal transduction
GO:0009584 IEAInterProdetection of visible light
GO:0018298 IEAInterProprotein-chromophore linkage
GO:0009585 IEAInterProred, far-red light phototransduction
GO:0017006 IEAInterProprotein-tetrapyrrole linkage
GO:0000160 IEAInterProphosphorelay signal transduction system
GO:0007131 IEAPLAZA Tree-based Orthologyreciprocal meiotic recombinationLOC_Os03g54084
GO:0010161 IEAPLAZA Tree-based Orthologyred light signaling pathwayAT2G18790
GO:0009630 IEAPLAZA Tree-based OrthologygravitropismAT2G18790
GO:0006325 IEAPLAZA Tree-based Orthologychromatin organizationAT2G18790
GO:0009409 IEAPLAZA Tree-based Orthologyresponse to coldAT2G18790
GO:0009649 IEAPLAZA Tree-based Orthologyentrainment of circadian clockAT2G18790
GO:0045892 IEAPLAZA Tree-based Orthologynegative regulation of transcription, DNA-templatedAT2G18790
GO:0010218 IEAPLAZA Tree-based Orthologyresponse to far red lightAT2G18790
GO:0046685 IEAPLAZA Tree-based Orthologyresponse to arsenic-containing substanceAT1G09570
GO:0010617 IEAPLAZA Tree-based Orthologycircadian regulation of calcium ion oscillationAT2G18790
GO:0010017 IEAPLAZA Tree-based Orthologyred or far-red light signaling pathwayAT4G16250
GO:0017148 IEAPLAZA Tree-based Orthologynegative regulation of translationAT1G09570
GO:0010374 IEAPLAZA Tree-based Orthologystomatal complex developmentAT2G18790
GO:0009640 IEAPLAZA Tree-based OrthologyphotomorphogenesisAT2G18790
GO:0009266 IEAPLAZA Tree-based Orthologyresponse to temperature stimulusAT2G18790
GO:0000724 IEAPLAZA Tree-based Orthologydouble-strand break repair via homologous recombinationLOC_Os03g54084
GO:0009687 IEAPLAZA Tree-based Orthologyabscisic acid metabolic processAT2G18790
GO:0009867 IEAPLAZA Tree-based Orthologyjasmonic acid mediated signaling pathwayAT2G18790
GO:0009638 IEAPLAZA Tree-based OrthologyphototropismAT2G18790
GO:0010148 IEAPLAZA Tree-based OrthologytranspirationAT2G18790
GO:0017012 IEAPLAZA Tree-based Orthologyprotein-phytochromobilin linkageAT2G18790
GO:0010203 IEAPLAZA Tree-based Orthologyresponse to very low fluence red light stimulusAT1G09570
GO:0015979 IEAPLAZA Tree-based OrthologyphotosynthesisAT2G18790
GO:0010029 IEAPLAZA Tree-based Orthologyregulation of seed germinationAT2G18790
GO:0031347 IEAPLAZA Tree-based Orthologyregulation of defense responseAT2G18790
GO:0010244 IEAPLAZA Tree-based Orthologyresponse to low fluence blue light stimulus by blue low-fluence systemAT2G18790
GO:2000028 IEAPLAZA Tree-based Orthologyregulation of photoperiodism, floweringAT2G18790
GO:0010202 IEAPLAZA Tree-based Orthologyresponse to low fluence red light stimulusAT2G18790
GO:0010201 IEAPLAZA Tree-based Orthologyresponse to continuous far red light stimulus by the high-irradiance response systemAT1G09570

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0000155 IEAInterProphosphorelay sensor kinase activity
GO:0005515 IEAInterProprotein binding
GO:0009881 IEAInterProphotoreceptor activity
GO:0042803 IEAInterProprotein homodimerization activity
GO:0043565 IEAPLAZA Tree-based Orthologysequence-specific DNA bindingAT2G18790
GO:0031516 IEAPLAZA Tree-based Orthologyfar-red light photoreceptor activityAT2G18790
GO:0031517 IEAPLAZA Tree-based Orthologyred light photoreceptor activityAT2G18790
GO:1990841 IEAPLAZA Tree-based Orthologypromoter-specific chromatin bindingAT2G18790
GO:0003729 IEAPLAZA Tree-based OrthologymRNA bindingAT1G09570
GO:0042802 IEAPLAZA Tree-based Orthologyidentical protein bindingAT2G18790
GO:0004672 IEAPLAZA Tree-based Orthologyprotein kinase activityAT1G09570
GO:0009883 IEAPLAZA Tree-based Orthologyred or far-red light photoreceptor activityAT2G18790

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0016604 IEAPLAZA Tree-based Orthologynuclear bodyAT2G18790
GO:0005829 IEAPLAZA Tree-based OrthologycytosolAT2G18790
GO:0005634 IEAPLAZA Tree-based OrthologynucleusAT2G18790
GO:0005737 IEAPLAZA Tree-based OrthologycytoplasmAT1G09570

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000014PAS domain
IPR003594Histidine kinase-like ATPase, C-terminal domain
IPR029016GAF domain-like
IPR013654PAS fold-2
IPR003661Signal transduction histidine kinase, dimerisation/phosphoacceptor domain
IPR013515Phytochrome, central region
IPR013767PAS fold
IPR003018GAF domain
IPR012129Phytochrome A/B/C/D/E
IPR001294Phytochrome
IPR013516Phytochrome chromophore binding site
IPR005467Histidine kinase domain
IPR000700PAS-associated, C-terminal
IPR016132Phytochrome chromophore attachment domain
IPR001610PAC motif

Mapman id Description
26.1.1.1.External stimuli response.light.red/far red light.phytochrome photoreceptor (PHY)
No SignalP domains detected for this gene.