Gene: Aco003458 (Ananas comosus)

Overview top

Gene Identifier
Aco003458
Transcript Identifier
Aco003458.1
Gene Type
Coding gene
Location
LG17 : 2993337-2997081 : positive

Family

Gene family
HOM04M005219
(37 genes in 28 species)
specific family

Descriptions

Description
endonuclease III 2

Identifiers

Type Value
idAco003458.v3
pacid33043549
tidAco003458.1.v3
tidAco003458.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006284 IEAInterProbase-excision repair
GO:0006281 IEAInterProDNA repair
GO:0006285 IEAPLAZA Homology (enrichment)base-excision repair, AP site formation

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677 IEAInterProDNA binding
GO:0051539 IEAInterPro4 iron, 4 sulfur cluster binding
GO:0003824 IEAInterProcatalytic activity
GO:0003906 IEAPLAZA Integrative OrthologyDNA-(apurinic or apyrimidinic site) lyase activityAT2G31450
GO:0019104 IEAPLAZA Integrative OrthologyDNA N-glycosylase activityAT2G31450

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IEAPLAZA Homology (enrichment)nucleus
GO:0042644 IEAPLAZA Integrative Orthologychloroplast nucleoidAT2G31450

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR003265HhH-GPD domain
IPR023170Helix-turn-helix, base-excision DNA repair, C-terminal
IPR000445Helix-hairpin-helix motif
IPR004036Endonuclease III-like, conserved site-2
IPR003583Helix-hairpin-helix DNA-binding motif, class 1
IPR003651Endonuclease III-like, iron-sulphur cluster loop motif
IPR011257DNA glycosylase

Mapman id Description
14.5.11.DNA damage response.base excision repair (BER).bifunctional glycosylase-lyase and endonuclease (NTH)
No SignalP domains detected for this gene.