PLAZA 4.0 Monocots gene overview : Aco001532

Gene: Aco001532 (Ananas comosus)

Overview

Gene Identifier: Aco001532
Transcript Identifier: Aco001532.1
Gene Type: Coding gene
Location: LG18 : 9871789-9874254 : positive

Family

Gene family: HOM04M000040
(1490 genes in 29 species)
specific family
Subfamily: ORTHO04M000394
(231 genes in 27 species)
specific family

Descriptions

Description: RNA-binding protein 24-B

Identifiers

Type	Value
id	Aco001532.v3
pacid	33028882
tid	Aco001532.1.v3
tid	Aco001532.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0010029	IEA	PLAZA Integrative Orthology	regulation of seed germination	AT3G54770
GO:0009737	IEA	PLAZA Integrative Orthology	response to abscisic acid	AT3G54770
GO:0009414	IEA	PLAZA Integrative Orthology	response to water deprivation	AT3G54770
GO:0042256	IEA	PLAZA Integrative Orthology	mature ribosome assembly	AT3G54770
GO:0042255	IEA	PLAZA Integrative Orthology	ribosome assembly	AT3G54770
GO:0009651	IEA	PLAZA Integrative Orthology	response to salt stress	AT3G54770

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0003729	IEA	PLAZA Integrative Orthology	mRNA binding	AT3G54770
GO:0003735	IEA	PLAZA Integrative Orthology	structural constituent of ribosome	AT3G54770

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005829	IEA	PLAZA Integrative Orthology	cytosol	AT3G54770
GO:0016020	IEA	PLAZA Integrative Orthology	membrane	AT3G54770
GO:0005618	IEA	PLAZA Integrative Orthology	cell wall	AT3G54770
GO:0009506	IEA	PLAZA Integrative Orthology	plasmodesma	AT3G54770
GO:0005634	IEA	PLAZA Integrative Orthology	nucleus	AT3G54770
GO:0042788	IEA	PLAZA Integrative Orthology	polysomal ribosome	AT3G54770
GO:0005886	IEA	PLAZA Integrative Orthology	plasma membrane	AT3G54770
GO:0005773	IEA	PLAZA Integrative Orthology	vacuole	AT3G54770
GO:0005774	IEA	PLAZA Integrative Orthology	vacuolar membrane	AT3G54770
GO:0005730	IEA	PLAZA Integrative Orthology	nucleolus	AT3G54770
GO:0022625	IEA	PLAZA Integrative Orthology	cytosolic large ribosomal subunit	AT3G54770
GO:0022626	IEA	PLAZA Integrative Orthology	cytosolic ribosome	AT3G54770

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR000504	RNA recognition motif domain

Mapman id	Description
35.1	not assigned.annotated

No SignalP domains detected for this gene.