PLAZA 4.0 Monocots gene overview : Aco000871

Gene: Aco000871 (Ananas comosus)

Overview

Gene Identifier: Aco000871
Transcript Identifier: Aco000871.1
Gene Type: Coding gene
Location: LG02 : 16040312-16047373 : negative

Family

Gene family: HOM04M000020
(1960 genes in 29 species)
specific family
Subfamily: ORTHO04M000358
(245 genes in 29 species)
specific family

Descriptions

Description: kinesin-like protein 1

Identifiers

Type	Value
id	Aco000871.v3
pacid	33037266
tid	Aco000871.1.v3
tid	Aco000871.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0007018	IEA	InterPro	microtubule-based movement

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IEA	InterPro	protein binding
GO:0003777	IEA	InterPro	microtubule motor activity
GO:0005524	IEA	InterPro	ATP binding
GO:0008017	IEA	InterPro	microtubule binding

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001715	Calponin homology domain
IPR001752	Kinesin motor domain
IPR031852	Spindle pole body-associated protein Vik1/Cik1, microtubule binding domain
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Mapman id	Description
20.1.3.12	.Cytoskeleton organisation.microtubular network.Kinesin microtubule-based motor protein activities.motor protein (Kinesin-14)

No SignalP domains detected for this gene.