PLAZA 4.0 Monocots gene overview : Aco000440

Gene: Aco000440 (Ananas comosus)

Overview

Gene Identifier: Aco000440
Transcript Identifier: Aco000440.1
Gene Type: Coding gene
Location: LG12 : 1826658-1827119 : negative

Family

Gene family: HOM04M007641
(24 genes in 20 species)
specific family

Descriptions

Description: nuclear factor Y, subunit C13

Identifiers

Type	Value
id	Aco000440.v3
pacid	33042897
tid	Aco000440.1.v3
tid	Aco000440.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

Browse

...the gene in IGV.js, a genome browser

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0046982	IEA	InterPro	protein heterodimerization activity

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072	Histone-fold

Mapman id	Description
15.5.50	.RNA biosynthesis.transcriptional regulation.transcription factor (DPB3)

No SignalP domains detected for this gene.