Gene: ATR1152G085 (Amborella trichopoda)

Overview top

Gene Identifier
ATR1152G085
Transcript Identifier
ATR1152G085.1
Gene Type
Coding gene
Location
AmTr_v1.0_scaffold00085 : 614070-641142 : positive

Family

Gene family
HOM04M006941
(30 genes in 28 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
geneNameEVM prediction AmTr_v1.0_scaffold00085.27
idevm_27.TU.AmTr_v1.0_scaffold00085.27.v1.0
nameevm_27.TU.AmTr_v1.0_scaffold00085.27
nameevm_27.model.AmTr_v1.0_scaffold00085.27
pacid31556322
tidevm_27.model.AmTr_v1.0_scaffold00085.27.v1.0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0043985 IEAPLAZA Integrative Orthologyhistone H4-R3 methylationAT5G63080
GO:0010030 IEAPLAZA Integrative Orthologypositive regulation of seed germinationAT5G63080

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0033746 IEAPLAZA Integrative Orthologyhistone demethylase activity (H3-R2 specific)AT5G63080
GO:0000987 IEAPLAZA Integrative Orthologycore promoter proximal region sequence-specific DNA bindingAT5G63080
GO:0033749 IEAPLAZA Integrative Orthologyhistone demethylase activity (H4-R3 specific)AT5G63080

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT5G63080

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR003347JmjC domain

Mapman id Description
12.3.3.9.7.Chromatin organisation.histone modifications.histone lysine methylation.JmjC group histone demethylase activities.histone demethylase (PKDM11)
15.5.29.RNA biosynthesis.transcriptional regulation.transcription factor (JUMONJI)
No SignalP domains detected for this gene.