Gene: ATR1136G078 (Amborella trichopoda)

Overview top

Gene Identifier
ATR1136G078
Transcript Identifier
ATR1136G078.1
Gene Type
Coding gene
Location
AmTr_v1.0_scaffold00071 : 1888424-1903072 : positive

Family

Gene family
HOM04M002904
(57 genes in 29 species)
specific family
Duplication type
Tandem duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
geneNameEVM prediction AmTr_v1.0_scaffold00071.120
idevm_27.TU.AmTr_v1.0_scaffold00071.120.v1.0
nameevm_27.TU.AmTr_v1.0_scaffold00071.120
nameevm_27.model.AmTr_v1.0_scaffold00071.120
pacid31561318
tidevm_27.model.AmTr_v1.0_scaffold00071.120.v1.0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0016575 IEAInterProhistone deacetylation
GO:0009845 IEAPLAZA Integrative Orthologyseed germinationAT5G08450
GO:0080186 IEAPLAZA Integrative Orthologydevelopmental vegetative growthAT5G08450
GO:0009908 IEAPLAZA Integrative Orthologyflower developmentAT5G08450
GO:1902074 IEAPLAZA Integrative Orthologyresponse to saltAT5G08450
GO:0009737 IEAPLAZA Integrative Orthologyresponse to abscisic acidAT5G08450

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT5G08450

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT5G08450

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR004043LCCL domain
IPR013951Histone deacetylation protein Rxt3

Mapman id Description
12.3.2.4.5.Chromatin organisation.histone modifications.histone deacetylation.SNL-HDA19 histone deacetylase complex.associated component HDC1/Rxt3
No SignalP domains detected for this gene.