Gene: ATR0827G179 (Amborella trichopoda)

Overview top

Gene Identifier
ATR0827G179
Transcript Identifier
ATR0827G179.1
Gene Type
Coding gene
Location
AmTr_v1.0_scaffold00047 : 964064-977004 : positive

Family

Gene family
HOM04M001378
(107 genes in 29 species)
specific family
Subfamily
ORTHO04M007932
(32 genes in 23 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
geneNameEVM prediction AmTr_v1.0_scaffold00047.32
idevm_27.TU.AmTr_v1.0_scaffold00047.32.v1.0
nameevm_27.TU.AmTr_v1.0_scaffold00047.32
nameevm_27.model.AmTr_v1.0_scaffold00047.32
pacid31563677
tidevm_27.model.AmTr_v1.0_scaffold00047.32.v1.0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0000737 IEAInterProDNA catabolic process, endonucleolytic
GO:0006259 IEAInterProDNA metabolic process
GO:0034090 IEAPLAZA Integrative Orthologymaintenance of meiotic sister chromatid cohesionAT3G13170
GO:0042138 IEAPLAZA Integrative Orthologymeiotic DNA double-strand break formationAT3G13170
GO:0007129 IEAPLAZA Integrative OrthologysynapsisAT3G13170
GO:0000706 IEAPLAZA Integrative Orthologymeiotic DNA double-strand break processingAT3G13170
GO:0007131 IEAPLAZA Integrative Orthologyreciprocal meiotic recombinationAT3G13170
GO:0051026 IEAPLAZA Integrative Orthologychiasma assemblyAT3G13170

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677 IEAInterProDNA binding
GO:0003824 IEAInterProcatalytic activity
GO:0005524 IEAInterProATP binding
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT3G13170

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005694 IEAInterProchromosome
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT3G13170

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR034136Topoisomerase 6 subunit A/Spo11, TOPRIM domain
IPR011991Winged helix-turn-helix DNA-binding domain
IPR002815Spo11/DNA topoisomerase VI subunit A
IPR013049Spo11/DNA topoisomerase VI, subunit A, N-terminal
IPR013048Meiotic recombination, Spo11

Mapman id Description
13.3.6.2.1.1.Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic double strand break initiation.meiotic topoisomerase-VI complex.component a/SPO11
No SignalP domains detected for this gene.