PLAZA 4.0 Monocots gene overview : ATR0827G073

Gene: ATR0827G073 (Amborella trichopoda)

Overview

Gene Identifier: ATR0827G073
Transcript Identifier: ATR0827G073.1
Gene Type: Coding gene
Location: AmTr_v1.0_scaffold00047 : 838992-848210 : positive

Family

Gene family: HOM04M001168
(122 genes in 27 species)
specific family
Subfamily: ORTHO04M001284
(103 genes in 27 species)
specific family
Duplication type: Tandem duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
geneName	EVM prediction AmTr_v1.0_scaffold00047.21
id	evm_27.TU.AmTr_v1.0_scaffold00047.21.v1.0
name	evm_27.TU.AmTr_v1.0_scaffold00047.21
name	evm_27.model.AmTr_v1.0_scaffold00047.21
pacid	31563643
tid	evm_27.model.AmTr_v1.0_scaffold00047.21.v1.0

Toolbox

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View

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006355	IEA	InterPro	regulation of transcription, DNA-templated
GO:0007165	IEA	InterPro	signal transduction
GO:0009584	IEA	InterPro	detection of visible light
GO:0017006	IEA	PLAZA Homology (enrichment)	protein-tetrapyrrole linkage
GO:0018298	IEA	PLAZA Homology (enrichment)	protein-chromophore linkage
GO:0009585	IEA	PLAZA Homology (enrichment)	red, far-red light phototransduction

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0000155	IEA	InterPro	phosphorelay sensor kinase activity
GO:0009881	IEA	PLAZA Homology (enrichment)	photoreceptor activity
GO:0042803	IEA	PLAZA Homology (enrichment)	protein homodimerization activity
GO:0005515	IEA	PLAZA Homology (enrichment)	protein binding

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR000014	PAS domain
IPR003594	Histidine kinase-like ATPase, C-terminal domain
IPR013767	PAS fold
IPR003661	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain
IPR001294	Phytochrome
IPR005467	Histidine kinase domain
IPR001610	PAC motif

Mapman id	Description
26.1.1.1	.External stimuli response.light.red/far red light.phytochrome photoreceptor (PHY)

No SignalP domains detected for this gene.