Gene: ATR0827G073 (Amborella trichopoda)

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Gene Identifier
ATR0827G073
Transcript Identifier
ATR0827G073.1
Gene Type
Coding gene
Location
AmTr_v1.0_scaffold00047 : 838992-848210 : positive

Family

Gene family
HOM04M001168
(122 genes in 27 species)
specific family
Subfamily
ORTHO04M001284
(103 genes in 27 species)
specific family
Duplication type
Tandem duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
geneNameEVM prediction AmTr_v1.0_scaffold00047.21
idevm_27.TU.AmTr_v1.0_scaffold00047.21.v1.0
nameevm_27.TU.AmTr_v1.0_scaffold00047.21
nameevm_27.model.AmTr_v1.0_scaffold00047.21
pacid31563643
tidevm_27.model.AmTr_v1.0_scaffold00047.21.v1.0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355 IEAInterProregulation of transcription, DNA-templated
GO:0007165 IEAInterProsignal transduction
GO:0009584 IEAInterProdetection of visible light
GO:0017006 IEAPLAZA Homology (enrichment)protein-tetrapyrrole linkage
GO:0018298 IEAPLAZA Homology (enrichment)protein-chromophore linkage
GO:0009585 IEAPLAZA Homology (enrichment)red, far-red light phototransduction

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0000155 IEAInterProphosphorelay sensor kinase activity
GO:0009881 IEAPLAZA Homology (enrichment)photoreceptor activity
GO:0042803 IEAPLAZA Homology (enrichment)protein homodimerization activity
GO:0005515 IEAPLAZA Homology (enrichment)protein binding

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR000014PAS domain
IPR003594Histidine kinase-like ATPase, C-terminal domain
IPR013767PAS fold
IPR003661Signal transduction histidine kinase, dimerisation/phosphoacceptor domain
IPR001294Phytochrome
IPR005467Histidine kinase domain
IPR001610PAC motif

Mapman id Description
26.1.1.1.External stimuli response.light.red/far red light.phytochrome photoreceptor (PHY)
No SignalP domains detected for this gene.