Gene: ATR0820G210 (Amborella trichopoda)

Overview top

Gene Identifier
ATR0820G210
Transcript Identifier
ATR0820G210.1
Gene Type
Coding gene
Location
AmTr_v1.0_scaffold00040 : 1453888-1464083 : negative

Family

Gene family
HOM04M004860
(39 genes in 28 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
geneNameEVM prediction AmTr_v1.0_scaffold00040.84
idevm_27.TU.AmTr_v1.0_scaffold00040.84.v1.0
nameevm_27.TU.AmTr_v1.0_scaffold00040.84
nameevm_27.model.AmTr_v1.0_scaffold00040.84
pacid31568038
tidevm_27.model.AmTr_v1.0_scaffold00040.84.v1.0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0007034 IEAInterProvacuolar transport
GO:0010252 IEAInterProauxin homeostasis
GO:0048364 IEAInterProroot development
GO:0006896 IEAPLAZA Integrative OrthologyGolgi to vacuole transportAT5G06140
GO:0006623 IEAPLAZA Integrative Orthologyprotein targeting to vacuoleAT5G06140
GO:0008333 IEAPLAZA Integrative Orthologyendosome to lysosome transportAT5G06140
GO:0009958 IEAPLAZA Integrative Orthologypositive gravitropismAT5G06140

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0035091 IEAInterProphosphatidylinositol binding
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT5G06140

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0030904 IEAInterProretromer complex
GO:0005771 IEAPLAZA Integrative Orthologymultivesicular bodyAT5G06140
GO:0005829 IEAPLAZA Integrative OrthologycytosolAT5G06140
GO:0016020 IEAPLAZA Integrative OrthologymembraneAT5G06140
GO:0043231 IEAPLAZA Integrative Orthologyintracellular membrane-bounded organelleAT5G06140
GO:0005768 IEAPLAZA Integrative OrthologyendosomeAT5G06140

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR001683Phox homologous domain
IPR033241Sorting nexin 1, plant
IPR015404Sorting nexin Vps5-like, C-terminal
IPR027267Arfaptin homology (AH) domain/BAR domain

Mapman id Description
22.5.5.3.5.Vesicle trafficking.endomembrane trafficking.protein recycling.Retromer protein recycling complex.component SNX1
No SignalP domains detected for this gene.