Gene: ATR0807G013 (Amborella trichopoda)

Overview top

Gene Identifier
ATR0807G013
Transcript Identifier
ATR0807G013.1
Gene Type
Coding gene
Location
AmTr_v1.0_scaffold00044 : 14363-21643 : negative

Family

Gene family
HOM04M000036
(1581 genes in 29 species)
specific family
Subfamily
ORTHO04M001415
(97 genes in 28 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
geneNameEVM prediction AmTr_v1.0_scaffold00044.1
idevm_27.TU.AmTr_v1.0_scaffold00044.1.v1.0
nameevm_27.TU.AmTr_v1.0_scaffold00044.1
nameevm_27.model.AmTr_v1.0_scaffold00044.1
pacid31575546
tidevm_27.model.AmTr_v1.0_scaffold00044.1.v1.0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0007034 IEAPLAZA Integrative Orthologyvacuolar transportAT5G45130
GO:0048527 IEAPLAZA Integrative Orthologylateral root developmentAT5G45130
GO:0009733 IEAPLAZA Integrative Orthologyresponse to auxinAT5G45130
GO:0048364 IEAPLAZA Integrative Orthologyroot developmentAT5G45130
GO:0009958 IEAPLAZA Integrative Orthologypositive gravitropismAT5G45130
GO:0009408 IEAPLAZA Integrative Orthologyresponse to heatAT5G45130
GO:0048530 IEAPLAZA Integrative Orthologyfruit morphogenesisAT5G45130

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003924 IEAUniProtGTPase activity
GO:0005525 IEAUniProtGTP binding
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT4G19640

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005783 IEAPLAZA Integrative Orthologyendoplasmic reticulumAT4G19640
GO:0005774 IEAPLAZA Integrative Orthologyvacuolar membraneAT5G45130
GO:0005886 IEAPLAZA Integrative Orthologyplasma membraneAT4G19640
GO:0005769 IEAPLAZA Integrative Orthologyearly endosomeAT4G19640
GO:0005768 IEAPLAZA Integrative OrthologyendosomeAT4G19640

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR001806Small GTPase superfamily
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR005225Small GTP-binding protein domain

Mapman id Description
22.8.1.6.Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase activities.F-class RAB GTPase
No SignalP domains detected for this gene.