Gene: ATR0789G164 (Amborella trichopoda)

Overview top

Gene Identifier
ATR0789G164
Transcript Identifier
ATR0789G164.1
Gene Type
Coding gene
Location
AmTr_v1.0_scaffold00036 : 5046190-5046735 : negative

Family

Gene family
HOM04M000093
(903 genes in 29 species)
specific family
Subfamily
ORTHO04M000040
(877 genes in 29 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
geneNameEVM prediction AmTr_v1.0_scaffold00036.175
idevm_27.TU.AmTr_v1.0_scaffold00036.175.v1.0
nameevm_27.TU.AmTr_v1.0_scaffold00036.175
nameevm_27.model.AmTr_v1.0_scaffold00036.175
pacid31554287
tidevm_27.model.AmTr_v1.0_scaffold00036.175.v1.0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355 IEAInterProregulation of transcription, DNA-templated
GO:0010200 IEAPLAZA Integrative Orthologyresponse to chitinAT1G51700
GO:0010227 IEAPLAZA Integrative Orthologyfloral organ abscissionAT4G38000
GO:0048510 IEAPLAZA Integrative Orthologyregulation of timing of transition from vegetative to reproductive phaseAT5G62430
GO:0048825 IEAPLAZA Integrative Orthologycotyledon developmentAT4G21030
GO:0042545 IEAPLAZA Integrative Orthologycell wall modificationAT3G50410
GO:2000032 IEAPLAZA Integrative Orthologyregulation of secondary shoot formationAT4G21030
GO:0010154 IEAPLAZA Integrative Orthologyfruit developmentAT4G21050
GO:0010214 IEAPLAZA Integrative Orthologyseed coat developmentAT1G29160
GO:0045893 IEAPLAZA Integrative Orthologypositive regulation of transcription, DNA-templatedAT3G50410
GO:0045892 IEAPLAZA Integrative Orthologynegative regulation of transcription, DNA-templatedAT5G62430
GO:0009704 IEAPLAZA Integrative Orthologyde-etiolationAT5G62430
GO:0008219 IEAPLAZA Integrative Orthologycell deathAT5G62430
GO:0009414 IEAPLAZA Integrative Orthologyresponse to water deprivationAT3G47500
GO:0009733 IEAPLAZA Integrative Orthologyresponse to auxinAT3G50410
GO:0009658 IEAPLAZA Integrative Orthologychloroplast organizationAT5G62430
GO:0009751 IEAPLAZA Integrative Orthologyresponse to salicylic acidAT3G50410
GO:0048359 IEAPLAZA Integrative Orthologymucilage metabolic process involved in seed coat developmentAT4G21030
GO:1902455 IEAPLAZA Integrative Orthologynegative regulation of stem cell population maintenanceAT2G34140
GO:1904216 IEAPLAZA Integrative Orthologypositive regulation of protein import into chloroplast stromaAT5G62430
GO:0045787 IEAPLAZA Integrative Orthologypositive regulation of cell cycleAT3G50410
GO:0009793 IEAPLAZA Integrative Orthologyembryo development ending in seed dormancyAT5G62430

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677 IEAInterProDNA binding
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT3G50410
GO:0044183 IEAPLAZA Integrative Orthologyprotein binding involved in protein foldingAT5G62430
GO:0003700 IEAPLAZA Integrative Orthologytranscription factor activity, sequence-specific DNA bindingAT5G62430
GO:0043565 IEAPLAZA Integrative Orthologysequence-specific DNA bindingAT1G64620
GO:0000976 IEAPLAZA Integrative Orthologytranscription regulatory region sequence-specific DNA bindingAT5G66940
GO:0044212 IEAPLAZA Integrative Orthologytranscription regulatory region DNA bindingAT3G50410

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0055035 IEAPLAZA Integrative Orthologyplastid thylakoid membraneAT5G62430
GO:0005739 IEAPLAZA Integrative OrthologymitochondrionAT5G62430
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT5G62430
GO:0005886 IEAPLAZA Integrative Orthologyplasma membraneAT3G47500
GO:0009941 IEAPLAZA Integrative Orthologychloroplast envelopeAT5G62430
GO:0005768 IEAPLAZA Integrative OrthologyendosomeAT3G47500
GO:0009507 IEAPLAZA Integrative OrthologychloroplastAT5G62430
GO:0005802 IEAPLAZA Integrative Orthologytrans-Golgi networkAT3G47500
GO:0009706 IEAPLAZA Integrative Orthologychloroplast inner membraneAT5G62430
GO:0009536 IEAPLAZA Integrative OrthologyplastidAT5G62430
GO:0005794 IEAPLAZA Integrative OrthologyGolgi apparatusAT3G47500
GO:0009534 IEAPLAZA Integrative Orthologychloroplast thylakoidAT5G62430
GO:0009570 IEAPLAZA Integrative Orthologychloroplast stromaAT5G62430

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR003851Zinc finger, Dof-type

Mapman id Description
15.5.1.5.RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.transcription factor (DOF)
No SignalP domains detected for this gene.