Gene: ATR0787G173 (Amborella trichopoda)

Overview top

Gene Identifier
ATR0787G173
Transcript Identifier
ATR0787G173.1
Gene Type
Coding gene
Location
AmTr_v1.0_scaffold00039 : 2933160-2994295 : negative

Family

Gene family
HOM04M002812
(58 genes in 29 species)
specific family
Duplication type
Tandem duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
geneNameEVM prediction AmTr_v1.0_scaffold00039.141
idevm_27.TU.AmTr_v1.0_scaffold00039.141.v1.0
nameevm_27.TU.AmTr_v1.0_scaffold00039.141
nameevm_27.model.AmTr_v1.0_scaffold00039.141
pacid31565167
tidevm_27.model.AmTr_v1.0_scaffold00039.141.v1.0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006417 IEAInterProregulation of translation
GO:0033554 IEAInterProcellular response to stress
GO:0033674 IEAInterPropositive regulation of kinase activity
GO:0042742 IEAPLAZA Integrative Orthologydefense response to bacteriumAT1G64790
GO:0045087 IEAPLAZA Integrative Orthologyinnate immune responseAT1G64790
GO:0009682 IEAPLAZA Integrative Orthologyinduced systemic resistanceAT1G64790

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0019887 IEAInterProprotein kinase regulator activity
GO:0019901 IEAInterProprotein kinase binding
GO:0043022 IEAInterProribosome binding
GO:0005488 IEAInterProbinding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005829 IEAPLAZA Integrative OrthologycytosolAT1G64790
GO:0016020 IEAPLAZA Integrative OrthologymembraneAT1G64790
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT1G64790

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR011989Armadillo-like helical
IPR033173Translational activator Gcn1
IPR021133HEAT, type 2
IPR004155PBS lyase HEAT-like repeat
IPR016024Armadillo-type fold

Mapman id Description
17.4.1.2.6.Protein biosynthesis.translation initiation.Pre-Initiation Complex (PIC) module.eIF2 Met-tRNA binding factor activity.eIF2-alpha kinase co-activator (ILITHYIA/GCN1)
No SignalP domains detected for this gene.