Gene: ATR0782G093 (Amborella trichopoda)

Overview top

Gene Identifier
ATR0782G093
Transcript Identifier
ATR0782G093.1
Gene Type
Coding gene
Location
AmTr_v1.0_scaffold00038 : 3473039-3501497 : positive

Family

Gene family
HOM04M004079
(44 genes in 29 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
geneNameEVM prediction AmTr_v1.0_scaffold00038.137
idevm_27.TU.AmTr_v1.0_scaffold00038.137.v1.0
nameevm_27.TU.AmTr_v1.0_scaffold00038.137
nameevm_27.model.AmTr_v1.0_scaffold00038.137
pacid31570924
tidevm_27.model.AmTr_v1.0_scaffold00038.137.v1.0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006351 IEAInterProtranscription, DNA-templated
GO:0010375 IEAPLAZA Integrative Orthologystomatal complex patterningAT2G15430
GO:0010374 IEAPLAZA Integrative Orthologystomatal complex developmentAT2G15430

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003899 IEAInterProDNA-directed 5'-3' RNA polymerase activity
GO:0046983 IEAInterProprotein dimerization activity
GO:0003677 IEAInterProDNA binding
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT2G15400

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005665 IEAPLAZA Integrative OrthologyDNA-directed RNA polymerase II, core complexAT2G15400
GO:0005730 IEAPLAZA Integrative OrthologynucleolusAT2G15430
GO:0000418 IEAPLAZA Integrative OrthologyDNA-directed RNA polymerase IV complexAT2G15400
GO:0005737 IEAPLAZA Integrative OrthologycytoplasmAT2G15430
GO:0000419 IEAPLAZA Integrative OrthologyDNA-directed RNA polymerase V complexAT2G15400
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT2G15430

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR011262DNA-directed RNA polymerase, insert domain
IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-type
IPR001514DNA-directed RNA polymerase, 30-40kDa subunit, conserved site
IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domain

Mapman id Description
15.1.6.1.RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 3
No SignalP domains detected for this gene.