Gene: ATR0772G062 (Amborella trichopoda)

Overview top

Gene Identifier
ATR0772G062
Transcript Identifier
ATR0772G062.1
Gene Type
Coding gene
Location
AmTr_v1.0_scaffold00030 : 5300443-5301252 : positive

Family

Gene family
HOM04M000414
(276 genes in 28 species)
specific family
Subfamily
ORTHO04M000852
(135 genes in 28 species)
specific family
Duplication type
Tandem duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
geneNameEVM prediction AmTr_v1.0_scaffold00030.201
idevm_27.TU.AmTr_v1.0_scaffold00030.201.v1.0
nameevm_27.TU.AmTr_v1.0_scaffold00030.201
nameevm_27.model.AmTr_v1.0_scaffold00030.201
pacid31556500
tidevm_27.model.AmTr_v1.0_scaffold00030.201.v1.0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0000289 IEAPLAZA Integrative Orthologynuclear-transcribed mRNA poly(A) tail shorteningAT3G44260
GO:0042742 IEAPLAZA Integrative Orthologydefense response to bacteriumAT3G44260
GO:0009611 IEAPLAZA Integrative Orthologyresponse to woundingAT3G44260
GO:0002213 IEAPLAZA Integrative Orthologydefense response to insectAT3G44260

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003676 IEAInterPronucleic acid binding
GO:0008408 IEAPLAZA Integrative Orthology3'-5' exonuclease activityAT3G44260

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR012337Ribonuclease H-like domain
IPR006941Ribonuclease CAF1

Mapman id Description
16.8.2.1.2.2.RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.CCR4-NOT complex.deadenylase component CAF1
No SignalP domains detected for this gene.